Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | ENRPPPTISKSMSINDQESEENAENFVHLPNPRRTLQKRTPFKDINILEVVTLPSWKKNVTTNVSKEVTPTRVAPRPMATSSPAQRSQTRSNLFGFDDDLACEDILTKSTTPSKGIAATSVSFNREVTPALANRSQMEVNTSECN |
1 | 3seeA | 0.04 | 0.04 | 0.95 | 0.59 | DisCoVER | | NLIKNEKFVTNKVTNPSKA--TAGEWFINNEGVTTIAKIDNSGANTSWAFLGQRITDGLEKGIYVLTFYAKPVSVYIKQNTTFFRAQYNFKIKDADKWTKVVVYYDGQVVAIAILKDCYVAILGQNKGGVVE----ISDVTLKK- |
2 | 3v89A2 | 0.08 | 0.08 | 1.00 | 0.59 | CEthreader | | SYESRSWLFRPGFRFENKRHYIGGILEHTQQTFDTRDMTVPATGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDRHNLSVNL |
3 | 6ytvA | 0.04 | 0.04 | 0.95 | 0.65 | EigenThreader | | LLVPALALFLLGYVLSISAAAALAPLTWVAVALLGGAFYECALKAQSQVLGWILIAVVIIILLIFTSVTRCL-------SPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCFFEGSHPKEYNTPSMKEWQQISSLYT |
4 | 5foeA2 | 0.10 | 0.07 | 0.67 | 0.32 | HHpred | | ----------------------GFNLMRVANTVRSLRDSG------ENYILVLPPWGR--EVALRFDLESLNR-FIPVIENDQVIYLQHYAEGWEYVRKRSCLPPSHYKKGWFEDVYSRNFQCVSIQG----------------- |
5 | 2pffB | 0.20 | 0.01 | 0.07 | 0.65 | MRFsearch | | -------------------------------------------GVRVIVAGTL-------------------------------------------------------------------------------------------- |
6 | 1ffkV | 0.12 | 0.11 | 0.90 | 0.27 | FFAS-3D | | ---QARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVS-------TSWRK---PRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHGFEEVRNVDDLEGVDGDTEAVRINSKVGARKDAGIRVLNPTYVEVEVSE-- |
7 | 3jc8Ta | 0.12 | 0.12 | 0.99 | 0.90 | SPARKS-K | | PRGRESAPGEVHSVESGDTLWDLSQRYLSPWYWPKVWSYNPIANPHWINQVRFFQVDGTVITALVPYLTVLGENHSIDKGSADGVELGNTFNILRKGDPSRHVLGHDVRKPSKEEQSACMVTEVKETSNCLMTRSLEELVPGDR- |
8 | 1j2aA | 0.24 | 0.06 | 0.23 | 0.46 | CNFpred | | --------------------DVADKISQVPTHDVGPYQNVPSKPVVILSATVLP------------------------------------------------------------------------------------------- |
9 | 6af0A | 0.06 | 0.05 | 0.85 | 0.83 | DEthreader | | RVTKELQATQSLASNFPPLFLARGVLIKALQPS--S-------KA--DSNKAQLRALKSFAINMKMPD-------LEINPSANLLTLPLAATDVNAIASGWYLLARKEHLAGA-QVLLGTLYAEVARLYEESPDFYQEGKHT--- |
10 | 2cseW | 0.13 | 0.12 | 0.94 | 0.61 | MUSTER | | KRIPRKTKGKSPATTEPGTS-NREQYRARPGQRATESAELPMKNND-----GTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVYSDTGINNANELRSGNVDNEGGSNQKPMSTR---IAEATSAIVSKHPAYQCH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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