>PF09658 (377 residues) MSWVVMDAGIEPDEEELADTLEGALKSLGSRVKIHTSKMGRNDRSSFDKVLKAWFGRSAP ETYGELFELVVTETIKLLRDGNIDPGESLSTIKTDKNGTYLGIAYNGEQAILPAIIKQPE YYERQSGFLSPTTGQKAQIRMDPLWFSFMALGFFTSFAGFIGGKYYLMTKPGIEVFWPYE VEEIIEKGILPLTGAGASGRISLSTEELYEMKLAMKLAEEGRDVIEEVYPVTLHLISLEG QVYTELKTTQLNLTGLSEYMEEYVNRIESASMGGLPILVELKAGNATIQKYPLWALVDIA ERELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSGRASGEF RKVMKTFMWQEHLEVLL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSWVVMDAGIEPDEEELADTLEGALKSLGSRVKIHTSKMGRNDRSSFDKVLKAWFGRSAPETYGELFELVVTETIKLLRDGNIDPGESLSTIKTDKNGTYLGIAYNGEQAILPAIIKQPEYYERQSGFLSPTTGQKAQIRMDPLWFSFMALGFFTSFAGFIGGKYYLMTKPGIEVFWPYEVEEIIEKGILPLTGAGASGRISLSTEELYEMKLAMKLAEEGRDVIEEVYPVTLHLISLEGQVYTELKTTQLNLTGLSEYMEEYVNRIESASMGGLPILVELKAGNATIQKYPLWALVDIAERELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSGRASGEFRKVMKTFMWQEHLEVLL | |||||||||||||||||||
1 | 4q2cA | 0.05 | 0.04 | 0.70 | 0.67 | DEthreader | -------AKWGSLGWHPLLCHLDVAAVT---L---QWRRVLPA-AWKARISGV--LGVGQEDAERWLAFFGGDIGKASQLVALAGLPLFHTISAN---LETVLA-DVFGLAVAVGGHHGFVPSYDVR--LDQQAVG-----PTV-SPDAFLAGLVSV-------ADWISNEEYFRQAERAALGWVGWRSGC----------------------VNLVHGHSDSALEEIFQLQGVYDE--------EQGAVGQFTRGKRALGTDQALVIVDEVHAYDV------------Y-T-T--LLHRLLEWLGALSV---Y-RG---------------KVLREDSLQAK--Y-KGP-G---YNS-IWG-IV--TA---SVEEA | |||||||||||||
2 | 1vt4I3 | 0.10 | 0.10 | 0.99 | 0.52 | CEthreader | KFYKPYICDNDPKYERLVNAILDFLPKISKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
3 | 5k3gA | 0.07 | 0.06 | 0.89 | 0.62 | EigenThreader | PELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTD---AGELYHLNNEVLGIEGNPMALHGVMEQQAKWLIRALRQNLETTATYDILKWWPGNLGHMYIKGKNFGPHTFMVPLR-------DEKTHKPLPGITIGDIMLTGQAIMLSYALNIATRYSAVR-----RQGQIDKNEARAYAFQFAGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMACAIGGV-------------------MLLQLARYLVKSAALVKSARSEPTSLI-----DRVP---NGGITEYIKTFQHIAKRQTLKAAASRLHTRLFIVEAFARRVNEILLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRP | |||||||||||||
4 | 1t11A | 0.15 | 0.12 | 0.79 | 0.36 | HHpred | ----QRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-------AVRQDVLGEVMQRHIEAIVKEKINPAGAFAPVEIGEGK---DLVFTATFEVYPEV-ELKGLLRKQQATWKEVAAENGKRSID--------------FVGSIDGVFPLEMGA--GRMIP-GFED----GIVGK-TKGMEFVIDVTFPEDYHA---ENLK-----GKAAKFAIKVNKVEA--RELPELARFGVGVDALKAEVRKNMERELKQARIKEQAIEGLVKEN-EI-QVPS-ALIDQEINVLRQGGN-------VE--AA----AQLPRELFEEQAKRRV-VV---------------GLLLGEVIRTHELKAD- | |||||||||||||
5 | 6gmhQ | 0.12 | 0.10 | 0.80 | 0.38 | MRFsearch | ------------DIQGALSAYGTATRILQEKVQA------DVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEH----YYNAISV------------------TTSYNLARLYEAMC----------EFHEAEKLYKNILRCYLRLGAMARDKGNFYEAS---------DWFKEALQIN--------------QDHPDAWSLIGNLHLAKQEWGPGQKKFERIYSMLALG-NVWLQTEKEKRHQDRALAIYKQVFAQVREATADISDVWLNLA--HIYVEQKQYISAVQMYENCLRKFYKQNTEVVLYLCKQTLLKARHVSDTVLMFNVALVLQRLATSVLKDELNAVKELELAHRYFSYLSKLALAA | |||||||||||||
6 | 3iygQ | 0.12 | 0.11 | 0.90 | 0.67 | FFAS-3D | -----LRLGLSVSIEGYEIACKKAHEILPDLVC--CSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKEELMNFSKGEEMDAQVKAIAGANVVVTGGRVADM-----------ALHYANKYNIMLVRLNSKWDLRRLCKTVRLNPPVLEEMGHC--DSVYLSEVGDTQVVVFKTIVLRMDDIERAVDDGVNTFKVL----------TRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFALAENSGVNEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD------- | |||||||||||||
7 | 5sujA | 0.15 | 0.12 | 0.82 | 0.56 | SPARKS-K | KLKSSQSYGVTVPAEVLGQQAERSIPSI--------NKTG-NLKQQIAKEVSKVCHTEPTQSCGQASNDVCELLLEKFHFTKYEAKNVLENTAPSSTNLLIRFEIDREDPPVLVKTKN-------ENF-NPETAVKNKIYLLE-------------------NKLYFIDKGNLFNLGPGKCTQLFNA----IGDSEYSLCDEPEKPEDFAISEIVDIFNEQKDFWIGSHSFTIYIPQTLGQFYPYQAYFGSHT--LQDWFVS--DKDEYLSRIGI--------------DKYIEKLAVLGKT-------TNTKERSDIYAEFFS---KRGREEINPELALKNLQETQEFIDTPGENPSDKVENYRNRAKLEHLESLL | |||||||||||||
8 | 3j02A | 0.13 | 0.11 | 0.84 | 0.88 | CNFpred | -------------PTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKAEKAKEKLAEIIVEAVSAVVDDEGKV---DKDLIKIEK---KSGASIDDTELIKGVLVDKERVSAQMPKKVT-----DAKIALLNCAIEEMLKDMVAEIKAS--GANVLFCQKGID---DLAQHYLAKEGIVAAR--------RVKKSDMEKLAKATGANVIDLSAQDLGDAGLVEERKISGDSMIFVE-VTMLIRGTEHVIEEVARAVDA----------------------AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAG | |||||||||||||
9 | 4fhmB | 0.05 | 0.03 | 0.65 | 0.67 | DEthreader | V-------LFKKE-CVAYDAGV-YT---------------------N--KSKGS---QTL-----RW-SIFQNRTLTIHFPSNMKDVAAILYYIRLSKCLAATSEICKII--ISMIVMLSYKLKVL--QCVET----------PY--LT---S---DHTTNSFIALIIPPSLP-DDE-FIPW--M----------------LSDF---IAWKSNLN-T---------VIQKCNLSLD------ESFSCVWSHSL-DS---I--HIFAHNTSITISL-----HSAQSPSFLCVAVL-ILFDWRLVSFFRDTENDLVTELVEKLFLF-K------QYNA-CMQLIGWL--N------SDPIAVYLKALIYLKSKEA--- | |||||||||||||
10 | 5azaA1 | 0.13 | 0.12 | 0.94 | 0.44 | MUSTER | GKLVIWINGDKG-----YNGLAEVGKKFEKDTGI---KVTVEHPDKLEEKFPQVA--ATGDGP--IIFWAHDRFGGYAQSGEITPDKAFQD-KLYPFTW--AVRYNGKLIAYPIAVEAL-IY---KDLLPPKTDKELKAKKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNTDYSIAEAAFNKGETA-AWSNIDTSKVNYGVTVLTFKGQPFVGVLSAGINAALAKEFLENYLDEGLEAVNKPLGAVA-LKSYEEELVKDRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS-GRQT-VDEALKDAQTRIAAAKAEAAAKAEAAAKAAAAWEDALKWLREN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |