>PF09561 (352 residues) NKGEWSEVYALFKLLGDKQLFAGDANLNKVEELFYPIIKIIRNESGGNFQYEINGDLVII SGGKEELRIPVKTFTEQSAKLLSTIKGSTGAFNIPEIETFMNSINCSSLKAKSTSKSDIR IVIHDQRISQTAELGFSIKSQLGGQATLLNAGKTTNFVYQVSGFQPIENEIQTINEIDTK SKIKDRIESVKQFGGNLDYLSLEQDVFKNNLVLIDSLLPNILAEIVKTFYTSNLSSIKDL TENINKTNPLNYDNQSAHTFYEYKIKRFLTDVALGMTPSKVWNGIYDATGGYLIVKENGD VLCYHIYNRNQFEDYLFQNTKLETASSSRHEFGKIYPENGKTYFKLNLQIRF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NKGEWSEVYALFKLLGDKQLFAGDANLNKVEELFYPIIKIIRNESGGNFQYEINGDLVIISGGKEELRIPVKTFTEQSAKLLSTIKGSTGAFNIPEIETFMNSINCSSLKAKSTSKSDIRIVIHDQRISQTAELGFSIKSQLGGQATLLNAGKTTNFVYQVSGFQPIENEIQTINEIDTKSKIKDRIESVKQFGGNLDYLSLEQDVFKNNLVLIDSLLPNILAEIVKTFYTSNLSSIKDLTENINKTNPLNYDNQSAHTFYEYKIKRFLTDVALGMTPSKVWNGIYDATGGYLIVKENGDVLCYHIYNRNQFEDYLFQNTKLETASSSRHEFGKIYPENGKTYFKLNLQIRF | |||||||||||||||||||
1 | 2fkhB | 0.10 | 0.05 | 0.55 | 0.91 | DisCoVER | -DGFKNEKDIADRFE-NWKEAQWLV-T-HNLDEIKSV--KA---------V---------------------------------------------------------V-L-SGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDK---HWLA--------------------------------------------------YQEMWDDNLLRILRHFT--GELPPRMFMT-----EFSQEEQNI--------VLNWLEKNRVLVLTILRG-----RGDFAAEWVLVAQKVARWILRNINLQHYGSGDILIRVTIQRKGGDNGTA-----------NMLQFKIP- | |||||||||||||
2 | 2eabA | 0.03 | 0.03 | 0.74 | 0.67 | DEthreader | --FGNGKIG-NEETL-WTGG-------GGENAQGNLNWGDIDLADVEYAMPTNTKETTT----DTLTVKGALLYNAATDYKQK--T--------TRVAKVVQDAA--KHIHSYKYYLGIWSVTAGNHGNTPW-S-FLNYPTYNMGELAEPLIEYVELGTAKVYAGAETTNPTTPIGEGDRYALLKEESHFYVNYMLHTGVA------YS-PEQGPLGTGNTYESSLVWQMLNDAE-------KPIEIKEWYFEGALGNQHRHMSLL-FPGWAIGQ--N-A--YVLMLFDYH------------APFQIDGNFGNTSGVDEQSN----------------------------- | |||||||||||||
3 | 3perA | 0.07 | 0.07 | 0.98 | 0.52 | CEthreader | SFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIF--LAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVAHFGRDGREEGEALLERRSGDEDNPRILTALSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAH-----HLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFH | |||||||||||||
4 | 3udfA | 0.07 | 0.05 | 0.74 | 0.62 | EigenThreader | INAKRQAIAEKAVQDGLAEAHDKPLSEFRAYANTYPAQVTKVN--SSSFEALMQDGSTVTVQPYRNA----------------------NSVGAA------------PSRASQIVKVKDIVRLRPNEAKTA----WSLVQ----------VPKVQGQLIAINPNDG----------------------------SIEAIVGGYFNRALQGWR---QPGSTIKPFLYALALERGMTPYERTRQLFMD--FGLQEDQIPRNYTIALGIQMATGYATFAN----GGYRVQPHFIQRIEDAYGKVIYEAYACSSSAYDMANHGTGTTND----AKDAFAGFNGKLVTVTWVGFAAL | |||||||||||||
5 | 2fkhB | 0.16 | 0.09 | 0.58 | 0.35 | HHpred | -------------------------------------------------------------------------FKN-EKDIADRFENWK---ENSEAQDWLVTMGHKSVKALSGYKSDINVQVLVFYKDALDIHNIQVKLV----------SNKRG-----------------FNQIDKH--WLAHYQEM-------------------------WKFDDNLLRILRHFTGELPPYH----SN--TKDKRRMFMTEFSNWLEKNRVLVLTDILRG-------RGDFAAE-WVLVAQKVSNNARWILRNINEVLQHYG-SGDISLSPRGSINFGRVTIQGGDLQFKIDPTE-- | |||||||||||||
6 | 2fkhB | 0.13 | 0.07 | 0.52 | 0.45 | MRFsearch | --------------------------------------------------------------------------FKNEKDIADRFENWKE---NSEAQDWLVTMGHKSVKAVVGYKSDINVQVLVFYKDALDIHNIQVKLVSN----------------------------------------------------KRGFNQIDKHWLAHYQEMW--KFDDNLLRILRHFTGESQEEQNIVLNWLEKN-----------------RVLVLTDILRGRGD--------FAAEWVLVAQKVSNNARWILRNINEVLQHYGSG------------DISLSPRGSINFGRVTIQRK- | |||||||||||||
7 | 1lrzA | 0.11 | 0.09 | 0.85 | 0.61 | FFAS-3D | TAKEFGAFVGHYELKLAEGYETHLVGIKNNNNEVIAACLLTAVPVMKVFKYFYSNRGPVIDYEN------QELVHFFFNELSKYVKKHRGNAGNDWFFDKMSNL------------------------------GFE----HTGFHKGFDPVLQIRYHSVLDLKDKTADDIIK----NMDGLRKRNTKKVKKNGVKVRFLSMDDKFYYNRLKYYKDRNFDEYIKELNEERDILNKDLNKALKDIEKR-----PENKKAHNKRDNLQQQLDANEQKIEEGKRLHGNELPISAGFFFINPFEVVYYAGGTSNAFRHFVQWEMRYNKFTEDKKGYNEIIEYVGDFIKPIN----- | |||||||||||||
8 | 5azaA | 0.15 | 0.13 | 0.86 | 0.69 | SPARKS-K | PPKTWEEIPALDKELKKGKSALM---FNLQEPYFWPLIAA---DGGYAFKYE-NGKYDIKDVG-----VDNAGAKAGLTFLVDLIKNKNADTDYSIAEAAFNK-----------GETAMTINAWSNIDTSKVNYGVTLPTFKGQPSKPF----VGVLSAGINAASPNKELAKEFLENYLLTD--EGLEAVNKDKGAVALKSYKDPRIAATMENAQSAFWYAVRTAVINAASGRQT-VDEALKDAQTRITPEYSTATSWDR-DHILALFLAISEVDFES---WELN------YFLVYL---------NDWAKFNAISYLGGAITRRERGAVTTLLPLPRYGEKYVNVIVDVSN | |||||||||||||
9 | 3b1cA | 0.11 | 0.08 | 0.74 | 0.65 | CNFpred | --GVVPAISIAIQAFTKEAVLINSP-------VYPPFARSVRLN--NRKLVSNS---LKEE--NGLFQIDFEQLENDIVENDVKLYL-GRVWEREVLEQIGHLCQ----------KHHVILVSDEI---------HQDLTLFGHEHVSFNTVSFKDFALVLSS--------------------ATKTFNIA--GTKNSYAIIENPTLCAQFKHQQ-EVSSLGYIATETAYRY----GKPWLVALKAV----------LEENIQFAVEYFAQEAPRLKVM-------KPQGTYLIWLD----FSDYGLTDDALFTLLHDQAKVILNR------GSDYGSEGELHARLNIAAPK | |||||||||||||
10 | 1yfiA | 0.12 | 0.07 | 0.53 | 0.67 | DEthreader | DLGKLYEKYILDIFLYEKSSKLL-----KA-LNLDLIDVSSSDT-----------------------------------------------------------------DLGTSPKTDATIRFTFH--QSSRLVPLNIKHSSKKKVSIA-E---YD---------------------------------------------V--ETICTGV-GISDGLKELIRKHQDQSAKLF------P-VQK-QRLT--------E-LLEPYRERFIRWCVT-L-----RAEKSEHPDLLIRFQVYVDVTIKNI--D-DYVSDRIEGGLNWTYA--SGSK------------AKKMQFKG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |