>PF09556 (298 residues) GRAYEYAWIKTLYKALCEMRKTKIVDNSSLHANEKAWMLMDEEMQQTFMISAEAAINEVL EMEPRLSENNNDELTLEFQKDGAGVKGDVRDIVIRRDDIEWEIGLSIKHNHDAVKHSRLS HKLDFGKEWFNIPCSSEYWNEVNPIFDMLKSEKENGSRWSEIVQKDENVYVPLLQAFMDE VNRAYKEDKNMPEKMVEYLIGKEDYYKIVSHDSKRLTLIHTFNMHDTLNKSSKDKVSEIE VPVVELPTRLIDIGFKPKSNNTVEMILDNGWQLSFRIHSASTKVEPSLKFDVQFISMP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | GRAYEYAWIKTLYKALCEMRKTKIVDNSSLHANEKAWMLMDEEMQQTFMISAEAAINEVLEMEPRLSENNNDELTLEFQKDGAGVKGDVRDIVIRRDDIEWEIGLSIKHNHDAVKHSRLSHKLDFGKEWFNIPCSSEYWNEVNPIFDMLKSEKENGSRWSEIVQKDENVYVPLLQAFMDEVNRAYKEDKNMPEKMVEYLIGKEDYYKIVSHDSKRLTLIHTFNMHDTLNKSSKDKVSEIEVPVVELPTRLIDIGFKPKSNNTVEMILDNGWQLSFRIHSASTKVEPSLKFDVQFISMP | |||||||||||||||||||
1 | 3bgwA2 | 0.06 | 0.04 | 0.63 | 0.71 | DisCoVER | NITGVPSG--------------------FTELDRMTY----------GYKRR-NF--VL--IA--ARP-----------------SMG--------------K-------------TAFLKQAVNL--HSLEMGKKENIKRL-IVTAGSI-NA---QKIKFASEDWGKLSMAIGEIINIF--DK--AGQSVNYIVIVMIDYLQLLSLKMARE-LDVVVI-ALSQ---LSRQVKRPDLLEDAD-I--IEFL-YRDDYYESKNIVEVIIAKHRGTVSLAF-I---KEYGNFVNL------ | |||||||||||||
2 | 1yfiA | 0.11 | 0.07 | 0.68 | 0.83 | DEthreader | GKLYEKYILDIFKDIESLKKYN--------------------------PQ-EKDISSKLLKALNLDLDN-IIDVSSSDTDLGRTIGSPKTDATIRFTQSSRLVPLNIKHSKKVSIAEYDVETICTG-VG---ISDGELKELIR-K-----------------------HQNDQSAK-FTQKQRLTELLEPYRERFIRWCVTRSHPLLIRFQVIYVDVTIKNI-D------------DY--S-DRIAEGSKARK----------PGFGT--G-LNWTYASGSK-A---KMQFK-G---- | |||||||||||||
3 | 5o8oA | 0.08 | 0.07 | 0.91 | 0.69 | CEthreader | TIAREVQRDTLLTNYMFSGLRADVTKAFSLAPLFQVSHQFAMGERLNPYAFAALYGTNQIFAQGNLDNEGALSTRFNYRWG----DRTITKTQFSIGGGQDMAQFEHEHLG---DDFSASLKAINPSFLDGGLTGIFVGDYLQAVTPRLGLGLQ--AVWQRQGLTQGPDTAISYFARYK--------AGDWVASAQLQAQGALN-TSFWKKLTDRVQAGVDMTLSVAPSQSMMGGLTKEGITTFGAKYDFR--------MSTFRAQIDSKGKLSCLLEKRLGAAPVTLTFAADVDHVT | |||||||||||||
4 | 7ck6A | 0.05 | 0.02 | 0.51 | 0.58 | EigenThreader | -----------------------LPNPGTFEECHRKCKELFP-------------------------IQMEGVKLTVNKGLSNH----FQVNHTVALESNYHFGVTYVG----------------------------------------------TKQLSPTEAFPMDN--------------------------------SGSLNAQVIHGPGLRSKMAIQTQQ----------SKFVNWSDLVGSGILVAHYLQTPCLALGGELVYGEMSLAGKYTLN-----NWLATVTLGQAGM | |||||||||||||
5 | 4zsfA2 | 0.14 | 0.07 | 0.49 | 0.40 | HHpred | GHAFEEMIKLLGNSSLEEYG-MRILLQKDLNM---MIENQEIANEPRDI----------NWLKEQIS----------------SNVFDL-YITVRNND-KEYVCIQSKTS---I-RDRVTRDREPSFFWSVACLDGDFLKM--P---KFIAMVNGTSNYRGWKPTIDRIYINL-ELFVQHAREAAEDW-------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6y6kA | 0.11 | 0.08 | 0.69 | 0.47 | MRFsearch | --MYRFCIANEIYTKARSMDADIELELEAISRALSFFSLFEKTIQERLEINRCEAIDKTQDLLAGLHARSNNRGTVKLP-----------PWLPKPSS------------------------GAYGELWAKCLGDESIQRAVSILLEKASAMQDLNDSFKRNLSSNVVQWSLWVSCLAQELASALKQHCR------------AGEFIIKKLKFWPIYVIIKPT--------------------KSSSHIFYSLGIRKADRVFSDTIDAGEWELTE----------------------- | |||||||||||||
7 | 2fkhB | 0.15 | 0.10 | 0.71 | 0.58 | FFAS-3D | ---------------------------LGSKTAKDGFK----NEKDIADRFENEAQDWLVTMGHNL-----DEIKSVKAVVLSGYKSDINQVLVFYKDALDIHNIQVKL----VSNKRGFNQIDK-------HWLAHYQEMWDNLLRILRHFTGELPPYSNTKDKRRMFMTEFSQEEQNIVLNWLEKNR---VLVLTDILGRGDFWVLVAQKVSNNARWILRNINEVLQHYGSGD-----------------ISLSPRGSGRVTIQRKGGDMLQFKID-------------------- | |||||||||||||
8 | 1yfiA | 0.11 | 0.08 | 0.74 | 0.58 | SPARKS-K | ---MRTELLSKLYDDIDQLPHTQ--HGVTSDRLGKLYEKYDIESLKKYNTQEKDISSKLLKALNL---DLDNIIDVSSSDTDLGRTIDA-TIRFTFHNSSRLVPLNIKHSSKKVSIAEYD--------------VETICTGVGELKELIRKHQNDQSA-KLFTP--------------VQKQRLTELLEPYRERFIRWCVTGNDLLIRFQVIDREYVDVTIKNIDDRIAEGSKARKPGFGTG--------LNWTYASGSAKKMQFKG------------------------------- | |||||||||||||
9 | 1sa3A | 0.10 | 0.06 | 0.58 | 0.60 | CNFpred | GKLYEKYILDIFK-------------------DIESLKKYNTNAFPQEKDISSKLLKALNLD--------DNIIDVSSSDTDLGRTSPKTDATIRFTFSSRLVPLNIKHSKVSIAEYDVETIC----TGVGIS------GELKELIRKHQNDQS-----------AKLFTPVQKQRLTELLE-------PYRERFIRWCVTHPDLLIRFQVIDREYVDVTIKNIDDYV---------------------------------------------------------------------- | |||||||||||||
10 | 2fkhB | 0.04 | 0.03 | 0.70 | 0.83 | DEthreader | AKDGFKNEKDIADRFENWK---------------------------------NSEAQDWLVTMGHNLEIK-SVKAVVLSGY--------KSDINVQVALDIHNIQVKLVSRGFNQIDKHWLAHYQEM----WKFDDNLLRILRHGELPP--------------TKDKRRMFMTEFEQNIVLNWLE--K--NRVLVLTDILRGAEWVLVAQKVSNNARWILRNINE---------------VLQHYGS--GDISLSP--RG-SINFG-----RVTIQRKGGDNGRETAMLQFKIDELDI | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |