Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTFSALLVAIGVMAGNIIYIPVGAAKCFPVQHTINVISGVLLGPWYAVANAFLVSLLRNMLGTGSPLAFPGSMIGAFLAGALYLKLGKKSWAVLGEIFGTGILGGLLAFPIAKLILGKDVAAFYFVIPFLISTIGGSIIGYSILKVMER |
1 | 5kbwA | 0.16 | 0.16 | 0.99 | 1.50 | DEthreader | | ISFVGIFSALATLVMF-LEFPIFPALKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKDPGAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLF-ATAFALGLNALIVFYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSS |
2 | 5kbwA | 0.16 | 0.15 | 0.99 | 1.33 | DEthreader | | ISFVGIFSALATLVMF-LEFPIFPALKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSPIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAF-ALGLNALVPFYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSS |
3 | 5kbwA | 0.17 | 0.17 | 0.99 | 1.44 | HHpred | | ISFVGIFSALATLVMFL-EFPIASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSGDPVNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFFALGLNALIVPLYFEAPKFFPFILAFNLVKFGIDSVVTFFVYKKVSS |
4 | 4hzuS | 0.15 | 0.15 | 0.98 | 1.17 | DisCoVER | | NTIAAVLIAMTVALSILVVIPIATKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTVWCLFSLVIHGTQGLVVGWLLPRHKGIRSMLLPLLVGS-LVMVIGYCLATTL-LFGWPAGLASIFGNVVQVGFGAGVTLSIVGPLT- |
5 | 4z7fA | 0.16 | 0.16 | 0.99 | 0.52 | MRFsearch | | IALMGVLIAVVVVFSRFFAYETTF-LKISFTFIPESLIGMIFGPFWAGIGTAVADVVGMLLFPYFPGFTLNAFLAGAIYGYFYYKKMTWQRVILATLLVTVLINIILTPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGN |
6 | 5d0yA | 0.19 | 0.18 | 0.97 | 2.44 | SPARKS-K | | LVLLAMVIAIKVVLGQ-FKVGD-ATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNFIGFTLTAALESMIYGFFLYKKPQIWRVIASVICVTVICYIGLNTLWVSMLTNFMVALSSRILKEMITPWIHMVVVWFILEGL-- |
7 | 4rfsS | 0.18 | 0.17 | 0.97 | 1.13 | MAPalign | | -VVDALLMAIVLLQNLLGYIPF-GPFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRLIFTNISILPRLLMGLVAGSLYLWGSMRQAMQVAAGCAAL-TNTVLVLGLVFLFYVLMISLFTNGIPELILDVLVAPLIAMPLRRQ-- |
8 | 5kbwA | 0.15 | 0.15 | 1.00 | 1.00 | CEthreader | | ISFVGIFSALATLVMFLEFPIFPQALKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSS |
9 | 4z7fA | 0.16 | 0.16 | 0.99 | 1.49 | MUSTER | | IALMGVLIAVVVVFSRFFAYET-TFLKISFTFIPESLIGMIFGPFWAGIGTAVADVVGMLLFPYFPGFTLNAFLAGAIYGYFYYKKMTWQRVILATLLVTVLINIILTPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGN |
10 | 5d0yA | 0.19 | 0.19 | 0.97 | 2.72 | HHsearch | | LVLLAMVIAIKVVLGQ-FKVGD-ATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNLGGFTLTAALESMIYGFFLYKKPIIWRVIASVICVTVICYIGLNTLWVSMLGGTNVALSSRILKEMITPWIHMVVVWFILEGL-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|