>PF08900 (218 residues) RVGALKSALTIELHTHYAIRLWEGRKKEDITGRRQYPDIIGMPQVIKRAGTISVDAAADN PYADSWLIKLEQALVTASASLQQSIATLQEILNALPAQITLSSVSSVEPLNIGVYSHSPL GYRCVWLLVGYDQLAMKTFQAFHYGFISRSERDTLLHNGSRVIRQIYGLVRSYRPLKVTR ADIEEKTPAGLEAIKWLGEPDPDILSGRLRSDFSPPLR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RVGALKSALTIELHTHYAIRLWEGRKKEDITGRRQYPDIIGMPQVIKRAGTISVDAAADNPYADSWLIKLEQALVTASASLQQSIATLQEILNALPAQITLSSVSSVEPLNIGVYSHSPLGYRCVWLLVGYDQLAMKTFQAFHYGFISRSERDTLLHNGSRVIRQIYGLVRSYRPLKVTRADIEEKTPAGLEAIKWLGEPDPDILSGRLRSDFSPPLR | |||||||||||||||||||
1 | 6n8aA | 0.13 | 0.09 | 0.71 | 1.00 | DEthreader | ------FKQVLKVNSLQAQR-VE---------------R-SFERVSNSLFSIDVILRIIGEEIDQVETVILEHISKVSEDLDKATAQLNKL-EDNG--ID---PGYTNPNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEARISA--------HSKGKE------------------------- | |||||||||||||
2 | 6n8aA | 0.11 | 0.09 | 0.81 | 1.38 | DisCoVER | ---RPVFKQVLKVNSLQA---Q---------------RVRSFERVSNSLFSIDVIL--RIIEIDQVETVILEHISKVSEDLDKATAQLN-KLEDNGIDP-GYTN----PNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKRARSAHSK----GKEGEVAEAA--PESATGDKEIADEA----- | |||||||||||||
3 | 6n8aA | 0.12 | 0.09 | 0.75 | 1.13 | MRFsearch | -----VFKQVLKVNSLQAQRVER-----------------SFERVSNSLFSIDVILRIEQDEIDQVETVILEHISKVSEDLDKATAQLNKLEDN---GIDPG---YTNPNEYTIEINSPQVAQFAHLIRKLDTLG-IVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGI-------------EKRARISAHSKG-KEGEVAEA----------- | |||||||||||||
4 | 6n8aA | 0.11 | 0.09 | 0.81 | 1.10 | SPARKS-K | --SRPVFKQVLKVNSLQAQRV--------------ERSFERVSNSLFSIDVILRIIGEQ-DEIDQVETVILEHISKVSEDLDKATAQLNKL---EDNGI---DPGYTNPNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKKG-KEGEVAEAAPESKEIADEAEKTK----------------- | |||||||||||||
5 | 6n8aA | 0.10 | 0.09 | 0.84 | 1.11 | MAPalign | ---RPVFKQVLKVNSLQAQRV-----------------ERSFERVSNSLFSIDVILRIIGDEIDQVETVILEHISKVSEDLDKATAQLNKL------EDNGIDPGYTNPNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKRARIS-AHSKGK--EGEVAEAA-PESATGDKEIADEAEKT--- | |||||||||||||
6 | 6n8aA | 0.13 | 0.11 | 0.85 | 1.18 | CEthreader | --SRPVFKQVLKVNSLQAQRVERS-----------------FERVSNSLFSIDVILRIEQDEIDQVETVILEHISKVSEDLDKATAQLNKLEDNGID------PGYTNPNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKRARISAHSKGKEGEVAEAAPESATGDKEIADEAEKTK------ | |||||||||||||
7 | 6n8aA | 0.12 | 0.10 | 0.86 | 3.30 | HHsearch | --SRPVFKQVLKVNSLQAQRV--ERSFER-----VSNSLFSIDVILRII--------GEQDEIDQVETVILEHISKVSEDLDKATAQLNKL-ED--NGID---PGYTNPNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKR-ARISAHSKGKGEVAEAAPESATGDKEIADEAEKTK------ | |||||||||||||
8 | 6n8aA | 0.13 | 0.11 | 0.83 | 1.42 | FFAS-3D | -------KQVLKVNSLQAQRVER-----------------SFERVSNSLFSIDVILRGEQDEIDQVETVILEHISKVSEDLDKATAQLNKLEDNGID------PGYTNPNEYTIEINSPQVAQFAHLIRKLDTLG-IVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGIEKRARISAHSKGKEGEVAEAAPESATGDKEIADEAEKTK------ | |||||||||||||
9 | 4m48A | 0.01 | 0.01 | 0.70 | 0.83 | DEthreader | NGAFVPYGIML----------Y-VIWLLSGIHDL--------------------------KGISTSGKVVWFTALFPYAALLILLIRGLTLP--G-S-FLGIQYYLNAVDAQVFSLPALTSFINSATSFIAGFVIFSVLGYMAHTLGVVPAAIAWALIFFMMLATLGLDSSFGSIILSD--F----PKIKRNRELFVA------------------MI | |||||||||||||
10 | 6n8aA | 0.11 | 0.08 | 0.73 | 1.00 | DEthreader | --SRPVFKQVLKVNSLQAQRVE----------------RS-FERVSNSLFSIDVILRIIGEEIDQVETVILEHISKVSEDLDKATAQLNKLEDNGID-P----GYTN-PNEYTIEINSPQVAQFAHLIRKLDTL-GIVDTLWLNTVLTSKQRTDATYQWQQRLIKLAGRIIGEKARISAHSKG------------KTK-------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |