Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | SGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNSRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYA |
1 | 1qaxA | 0.04 | 0.04 | 0.81 | 0.83 | DEthreader | | -------------SPA-----SLLA-ALPIANMIVIG-TFELPVEEPSIAAMAAGFTTSSSAPLMHAQVQIVGPMGGQVRLRILSNLADRLARAQVRIPLVIGILAY-AYRAATNKIMNGI--------PLIWVASLT-TWEKDNN-GHLVGTLEMPMPVGLASLI |
2 | 4f0pA1 | 0.08 | 0.07 | 0.79 | 0.83 | DEthreader | | SAANKPR-LVFELRYAQGANQDVEFV-----------L-SPGLPKV-MLEAGIRS-P-----------AGHE--T-NPWHDEFDL-D-HGHVRYFGDHKGETKGNRLLLEAARLAPPLFLFRAVTVKHVEFCGAAIIERLEHVVQ-RSFPNLSLDLAVVGDGV--- |
3 | 2k4qA | 0.15 | 0.13 | 0.91 | 1.93 | HHpred | | --MPVPNPTM----PVKGAGTTLWYKGSGDP--YANP------LSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG-KAVTAKEVITRTVKVTNVGRPSMAE |
4 | 6p3eA1 | 0.11 | 0.09 | 0.83 | 1.22 | DisCoVER | | -MPVKGAGTT-LW------------VYKGSGDPYANPLS---DVDW--SR-LAKVKDLTGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVT-AKEVITRTVKVTNV------- |
5 | 2k4qA | 0.15 | 0.12 | 0.83 | 1.25 | MRFsearch | | -------------------TLWVYKGS---GDPYAN------PLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG-KAVTAKEVITRTVKVTNVGRPSMAE |
6 | 6p3eA1 | 0.16 | 0.14 | 0.88 | 1.37 | SPARKS-K | | ----MPVPNPTMPVKGAGTTLWVYK---------GSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVS-SIGKAVTAKEVITRTVKVTNVG------ |
7 | 5iv5W | 0.10 | 0.08 | 0.86 | 0.87 | MAPalign | | RNNMFSCVFAQRTVQS-LLGSFTVGT-------------------YLIDFSGLMIYSVKMPENRLSYETDWN----YNSPNIRITGRELDPLVISFRMDSEACNYRAMQDWVNSVVEADIQVNLLPHTAVMFTMHSISVSAPELGDNQITTFDVTFAYRVMQAGAV |
8 | 6te9G | 0.04 | 0.03 | 0.78 | 1.00 | CEthreader | | ----------------------------------AQNGKDLLIKLDLQFETIAGLRATRISFNAETVDVTSLESQGGWRELLGGAGVRSASISGAGVF-KDADTDERARQIFFDGEVPEFQVIIPDFGIVQGPFMITSIDY-AGSHNGEASYELAMASAGALSFTA |
9 | 2k4qA | 0.14 | 0.13 | 0.93 | 1.27 | MUSTER | | AMMPVPNPT----MPVKGAGTTLW-VYKGSGDPYANPLSD------VDWSRLAKVKDLTPGELTAESYDDSYLDDEDADTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG-KAVTAKEVITRTVKVTNVGRPSMAE |
10 | 2k4qA | 0.14 | 0.13 | 0.93 | 3.50 | HHsearch | | AMMPVPNPTM----PVKGAGTTLWVYKGSGDP-YANP------LSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG-KAVTAKEVITRTVKVTNVGRPSMAE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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