>PF08643 (314 residues) GRMDVVVIAGSPALPLTRSLSLDLERKGFVVFVVANSHEDEIMIQHLARPDIRPLSIDIT DPPSTGTSIDTFARYLQSTHAAIPNGKRHHLLLKAVILIPSLNYQTSPIATIPPSSFADL FNTHLLQPILTIQAFLPLLTARLSPPSDKERPSPKVLVFTPSIISSINPPFHAPEATICS ALSAFTEVLTGELRPLGIPVTHMQLGTFDFAGFTPAANSRLLQPHGLLTAPEDAEALPWP DSARHAYGKNFVSQSGSAIGAGRIRGMRGSSLKELHNAVFDVIDGSLTNGTVQVGLGANI YGFVGRWVPKGLVS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | GRMDVVVIAGSPALPLTRSLSLDLERKGFVVFVVANSHEDEIMIQHLARPDIRPLSIDITDPPSTGTSIDTFARYLQSTHAAIPNGKRHHLLLKAVILIPSLNYQTSPIATIPPSSFADLFNTHLLQPILTIQAFLPLLTARLSPPSDKERPSPKVLVFTPSIISSINPPFHAPEATICSALSAFTEVLTGELRPLGIPVTHMQLGTFDFAGFTPAANSRLLQPHGLLTAPEDAEALPWPDSARHAYGKNFVSQSGSAIGAGRIRGMRGSSLKELHNAVFDVIDGSLTNGTVQVGLGANIYGFVGRWVPKGLVS | |||||||||||||||||||
1 | 1fduC | 0.15 | 0.12 | 0.85 | 1.33 | DEthreader | A-RTVVLITGCSSG-IGLHLAVRLADSSFKVYATLRDLKTQGRLWEARCGSLETLQLDVRDSKSVAAARERV--TEG-------------R-V-DVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG----------SGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFM-EKV-LG------------SPE--EVLDRTDIHTFHRFYQYLALSK---QVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDSGSNVT | |||||||||||||
2 | 1fduC | 0.16 | 0.13 | 0.84 | 3.72 | HHpred | -ARTVVLIGCSSG--IGLHLAVRLASDSFKVYATLRDLKTQGRLWALPPGSLETLQLDVRDSKSVAAARERV--TE---------GRVD-------VLVCNAGLLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG----------SGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSP------------EEVLDRTDIHTFH-RFYQYLALSKQV------FREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSYVT- | |||||||||||||
3 | 4fn4A | 0.15 | 0.11 | 0.77 | 0.58 | DisCoVER | LKNKVVIVTGAG-SGIGRAIAKKFALNDSIVVAVELLEDRLNQIVELRGKEVLGVKADVSKKKDVEEFVRRTFETY----------SR--I-D-VLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLK----------QGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIG---L--GSS----KP-SELGMRTL-----------TKLMSL-----------SSRLAEPEDIANVIVFLASASVNGDAVVVDGGL--T------------- | |||||||||||||
4 | 3m1aA | 0.17 | 0.14 | 0.81 | 0.58 | MRFsearch | ---KVWLVTGA-SSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYG---------RVDVLVNNAGRTQ------VGAFEETTERELRDLFELHVFGPARLTRALLPQRER-----------GSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAY--------------------FSEENPAYAEKVGP--------TRQLVQGPGDPAKAAAAIRLALDTEKTPLRLALG--GDAVDFLTGHLDSVRAE | |||||||||||||
5 | 5ig2A | 0.13 | 0.11 | 0.84 | 1.31 | SPARKS-K | FDGKVAVITGA-GSGFGRAFAEKGASLGMKLVLADVDEGALARTVDTLRAEVIGVRTDVSNGAQVQALADAALEAFG---------KVH-------LLFNNAGVGGGFLWESSANDWAWVFGVNVMGVAHGVRVFAPIMLGQNE---------AAHIVNTASVAGLLSPPSMGIYNASKHAVVSLTETLYHDLRNAEVGCSLLCPAFVPTGIADAERVR-----------PEALRNEAQPTRSQLAADRQLQRAVRSG----------KLGATDVATLTFEAIAER--RFYILTHPAILATVRLRHEDIELQRN | |||||||||||||
6 | 1gegE | 0.15 | 0.12 | 0.78 | 0.39 | MAPalign | -MKKVALVTGAGQ-GIGKAIALRLVKDGFAVAIADYNDTAKAVASEIAGGHAVAVKVDVSDRDQVFAAVEQARKTL---------GGFD-------VIVNNAGVPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE---------GHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMW----------------------------AEIDRQVSEAAGKPLGYGTAEFAKRITLSEPEDVAACVSYLASPDSMTGSLLIDGGM--VFN----------- | |||||||||||||
7 | 3wtcA | 0.16 | 0.12 | 0.80 | 0.23 | CEthreader | LSGKIAAVTGAA-QGIGKAIALRLAKDGADVILLDVKQDTLAETAKEVEALAVALTADISNRDQFRSTLADAAKTLG---------GLD-------IMVNNAGIQVKPILDIEPAEIEKIFSINVQGVLWGMQAAATLFKEKG---------TKGKIINACSIAGHEGYPLLGAYSATKFAVRALTQSAAKELASSGITVNSYCPGIVGTDMWVTIDKRMAEITGTEIGATYKKYV-------------------------EGIALGRVETADDVAGFVAYLSSSDATGQSVLIDGGLVFR------------- | |||||||||||||
8 | 1fduC | 0.17 | 0.14 | 0.85 | 1.15 | MUSTER | -ARTVVLITGCSS-GIGLHLAVRLASDSFKVYATLRDLKTQGRLWEAAPGSLETLQLDVRDSKSVAAARERV-----------TEGRVDVLVCNAGL------GLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS----------GRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKV-------------LGSPEEVLDRTDIHTFHRFYQYLALSKQVFRE------AAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVT | |||||||||||||
9 | 5ig2A | 0.12 | 0.10 | 0.83 | 0.65 | HHsearch | FDGKVAVIGAGSG--FGRAFAEKGASLGMKLVLADVDEGALARTDTLRGAEVIGVRTDVSNGAQVQALADAALEAF---------GKVH-------LLFNNAGVAGGFLWESSANDWAWVFGVNVMGVAHGVRVFAPIMLGQN---------EAAHIVNTASVAGLLSPPSMGIYNASKHAVVSLTETLYHDLRNGEVGCSLLCPAFVPTGIADAERVRPE----------ALRNEAQPTRS-QLAA-DRQLQR---------AVRSGKLGATDVATLTFEAIAER--RFYILTHPAIL--ATVRLRHEDIELQ | |||||||||||||
10 | 3m1aA | 0.17 | 0.14 | 0.79 | 2.02 | FFAS-3D | -SAKVWLVTGASS-GFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQV---------------GAFEETTERELRDLFELHVFGPARLTRALLP-----------QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKG----------------AAYFSEENPAYAEKVGPTRQLVQ------------GPGDPAKAAAAIRLALDTEKTPLRLALGGDA--VDFLTG-------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |