>PF08604 (509 residues) PSTTSTASNYPDVLTRPSLHRSHLNFSMLESPALHCQPSTSSAFPIGSSGFSLVKEIKDS TSQHDDDNISTTSGFSSRASDKDITVSKNTSLPPLWSPEAERSHSLSQHTATSSKKPAFN LSAFGTLSPSLGNSSILKTSQLGDSPFYPGKTTYGGAAAAVRQSKLRNTPYQAPVRRQMK AKQLSAQSYGVTSSTARRILQSLEKMSSPLADAKRIPSIVSSPLNSPLDRSGIDITDFQA KREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGEFRKTNQRIDNKCSTGYEKNM TPGQNREQRESGFSYPNFSLPAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVL PKISLPITSSSLPTFNFSSPEITTSSPSPINSSQALTNKVQMTSPSSTGSPMFKFSSPIV KSTEANVLPPSSIGFTFSVPVAKTAELSGSSSTLEPIISSSAHHVTTVNSTNCKKTPPED CEGPFRPAEILKEGSVLDILKSPGFASPK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PSTTSTASNYPDVLTRPSLHRSHLNFSMLESPALHCQPSTSSAFPIGSSGFSLVKEIKDSTSQHDDDNISTTSGFSSRASDKDITVSKNTSLPPLWSPEAERSHSLSQHTATSSKKPAFNLSAFGTLSPSLGNSSILKTSQLGDSPFYPGKTTYGGAAAAVRQSKLRNTPYQAPVRRQMKAKQLSAQSYGVTSSTARRILQSLEKMSSPLADAKRIPSIVSSPLNSPLDRSGIDITDFQAKREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGEFRKTNQRIDNKCSTGYEKNMTPGQNREQRESGFSYPNFSLPAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLPTFNFSSPEITTSSPSPINSSQALTNKVQMTSPSSTGSPMFKFSSPIVKSTEANVLPPSSIGFTFSVPVAKTAELSGSSSTLEPIISSSAHHVTTVNSTNCKKTPPEDCEGPFRPAEILKEGSVLDILKSPGFASPK | |||||||||||||||||||
1 | 5jcss | 0.09 | 0.08 | 0.95 | 1.62 | SPARKS-K | EEPSEEDL-THILAQKFPILTNLIPKLIYMNTKFISLNKGAHTRVVSVRCERLDILFKNNGINKPDQLIQSSVCFAGAIEFKALESLDIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSLRLMSVCIQMTEPVLTGKTT-------VVQQLAKMLAKKLTVSQQTETKPKTVAVPI------QENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIRASDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMNPATDVGKRDLP-------MGIRSRFTIYVHSPERDITDLLSIIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNQKPHFSTRTLLYVTDIIHIYGLRRSLGFCMSFLTLLDQKSEAILKPKFTLGRLKNVKSIMS------YIITPFVEKN | |||||||||||||
2 | 2nbiA | 0.11 | 0.11 | 0.96 | 1.14 | MUSTER | LNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTS-----DPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVIT-------SPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDDVLPTPQNINCPACCAF-ECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPM--FTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPS---SQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVCSPT--MMPSPLPSPTE | |||||||||||||
3 | 5zvs4 | 0.07 | 0.06 | 0.80 | 0.88 | DisCoVER | -ITIVVIPTAHFSWTDTNFLNSVDRRFAVYAPWLQLDSASLLIKPKREFCLTILPSLLGPRTFLLDVDYPLSVLWLLLLPPVALFRALRLFSALPVVDII-CLLESEPAPGTRLT-IHSVPTDLLTSLSIQEG-----VRYPLRFVHWVLLALLMSDDVTISTAHRPFVHITVERCASARIIDVRGSPAMYA-NA--VCLTL--PKGSYKSTIITLPLPILEQAAVIDRAASISPTTSDDAVVLTPAQRLLTQQGRVL-AF-AH--SDYEL--------------------------------LSANIPIQVVRGSIPIDHVVNLLARRNRVGGTALQVLLDYC---------YRQAPTAGRLYKQLFGPWLLEPLIKLRLVASAPAKVLRA-----GWTIDGDPPLEVSC------------------LCAYVTDRDSRALVTV-GGDQMFVEYAPPLTFLLPVTYVVHWRVLLNGGNVSFTSGLEW--------------------- | |||||||||||||
4 | 5gslA | 0.04 | 0.03 | 0.60 | 0.67 | DEthreader | ------------QHDGRLY-V---TEYIIRPGPYITYLEPSYWET---VLYI-VDVPISL------EFYLYVTRHKL-IH-LWTEFW-----------YSF-YRTFD----FKEDKLLYFKTGIYR----Y-V-KLKTPPLSI-T-DEAELLYLLPLGIHNLNYYLYVPQHVE---------YELNKESLYLFGERGLLTLLAMSNV-P-----FDVIDISTEMQYEQLKYVENLLRDFLGVEVERAKARIPYLSV-----A---EGIDRMVVVAREVKGEAIA-GTIVRKGKGS-A--I-----------RLQYYS------------------------------------SYHDMHRFVDKILQ-QGVKREVEVSNRD-----------RIHYLVLVN---E-E-VAGKV----------------------KYRGVEFEI-----EVKLVYA----------EIAIRIGVGGYVLQEKG-------------------------- | |||||||||||||
5 | 5l9wb2 | 0.08 | 0.06 | 0.81 | 0.72 | CEthreader | --------------------------IGNTNGGVARIGKTKSVDTIESGPVFGTFGGAYMARLYGLKDVVCTTTKASIIRDGQPMFQRGGE---------LMEVPVQSSFAMLRSAVVGGGSIARVRDKSVTLGPESMGAAPGPACYGLGGNEATLTDALLALGYLDPNNFLGGRRQLKVDLERNVAKPLGVSLEVAALSIRDEAVAMMTELLQATLAEAKLTAQDAALFAFGGNGPMFAAFVAERLGVQAAYAFNLGPVFSAFGSAISDVVHVYERGVDLRWNATVKGQLLPTLDALQTQAERDLKGESFDPAKAAYVWELDAEVSTVRAELAQSAASTVLDALTQAVTAAGVASLPLLGRLSSRFVVGAHGMKKRADRVPAEAPASREMRFNGASEAASPVYRWETMNVGDIAVGPAVVNG---------STLTCPIPPRWQLRVDDYGNAEL------------------------------------------------------ | |||||||||||||
6 | 6sa8A | 0.06 | 0.06 | 0.93 | 0.75 | EigenThreader | -------GGSCLGKKLLEAARAGQGADVNTAD-------------ETGFTPLHLAAWEGHLGIVEVLLKNGADVNANDERGHTPLHLAAYTGHLEIVEVLLKNGAGVNATDVIGTAPLHLAAMWGHLEIVEVLLKNGADPKAQDKFGKTPKDLAKDNGILKDLVKKLSSPNENELQNALWTLGNIASGGILQEALWALSNIAQILQEALWALSNIASGGGALPALVQLLSSPNALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNALSNIASGGNEQIQAVIDAGALPALVQLL--SSPNLIIAAKRGFADRVRLYLRLGADQNTADETGFTPLHLAAWEGHLGIVEVLLKNGAD---VNANDE------RGHTPLHLAAYTGHLKNGAGVNATDVIGTAPLHLAAMCGHLEIVEVLLKNGADVNAQD | |||||||||||||
7 | 2g7uA | 0.13 | 0.04 | 0.33 | 0.32 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------YIQSIERGFAV--LLAFDAQRPNPTLAEL-ATEAGLSRPAVRRILLTLQKLGYVAGSG---------------GRWSLTVLSIGQHY---SE-SHALIEAA-PRLLEVAEK---------------------TQESALGVLDVVYPVRRISINVSVGTRVPAYA------------TS-GRALLAWKVREQGFALTSEE-LEKGLISLAAPVHDGGTVVGVVACST-------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 2pffB | 0.22 | 0.02 | 0.08 | 0.52 | MRFsearch | ----------------------------------------------GASGLGVLTHRN----------------------------------------------------------TGVRVIVAGTL------------------------------------------------------------DLYKTSKAAQDVWNRADN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3cnfB | 0.09 | 0.08 | 0.90 | 0.61 | FFAS-3D | PASDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTGTVTNEFASRFRTIVATQDDMQKATRSCTKQWLRHLETQFDNIAVADHLSVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADQTSDAVRQLRALMPTLSTSQIRHAIERIAQ---------ITDVDSTDYGLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRV------TYTHPPTGMAYPSPTGRPHVHMTINERAILDIEYTAEVMTPSEGYTQHVD---AESIMTAPKGKLFHLQF--------MDGLLRPEASGEDMRLIYPLPISVARSMRAIVNHNEVDRPREMDTGTLSRNGDLLYSPVANG-------------------------- | |||||||||||||
10 | 4btgA | 0.12 | 0.11 | 0.94 | 1.35 | SPARKS-K | ALQLPLQFTRTFSASMTSELLWEVGKGNIDPVMFFQYAQAGGAL----SVDELVNQFTEHQSTACNPEIWRKTAYITGSSNRAIKADAVGKVPP----TAIL---EQLRTLAPSEHELFHTTDFVSPLGFILPDAAYVYRVGRTATYP----NFYALVDCVRASDLRRMALSSVDSKMLQAT---FKAKGALAPAL--ISQHLANAATTAFDANAVPSTPKELDPSARLRNTNGIDQLRKQRGRAEVIFSELSSTIIPWFIEAMSEVSPFKLRPINYIGQTSAIDHMGQPSHVVVYEDWQFAKEITVKLANNSNQRFLDVEPATLAPIGNTFAVAFVKNYEAVSQRGTVNSNGAEMTLGFPSVVYALDRDPMVAIAALRTGIVDESLEARHNPEVVVSEHQGVAAEQGSLYLVRTELRIPVGY----NAIEGGSIRTPEPLAYNKPIQPSEVLQAKVLDLANHTPWHEASTEFAYEDA--YSVTIRNKREVKE---FELLGLGQRRERV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |