Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | SSASPTKTATSPQPNQKLDWNAFLQLRKQRRRYNLVSSLFTSAVGTTAGVSYLANKEIDPTQMIMGMDPIILFGLATVSCGALGWLAGPVLGSSAFSVVKRRVMGQINEREREFLQHIKKNRVDPSFQSFSNPVPDYYGEKIGSIKQYKQWLKDQRAYNRKSK |
1 | 6y79X | 0.06 | 0.04 | 0.78 | 0.68 | DisCoVER | | NYSYGDYPL------I-DADP-HFRVVGYMRPDYG-VIGLATA-AL--PAGIC--FAEWLDPVKGKFAR--PSVKFLRVATMLGFAVGFGAAYARS----------SLRFFGV-TENAREPYGTSSLTPELQEAASAHSIPWFNF--V--N--HP--YHGRE- |
2 | 3q5zA | 0.06 | 0.04 | 0.75 | 0.83 | DEthreader | | -----------------AGDSFMRDLLKREEELIGYCREEALPRVGRSVVFTM-RLELHEAFAAARLPSDALLLM-AA--VD--LE-LLFSTLDFVYVFRGDEGILALHILTAQLIRLAA-NLQSKGL---------------PDNLFIMLGDVSALWKVGTR |
3 | 3g61A1 | 0.06 | 0.06 | 0.96 | 0.51 | CEthreader | | --VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE-----ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKGMFFQAMATFFGGFIIGFTRIGQVLTVFFSVLIGAFSVGQAS |
4 | 5z1fA | 0.07 | 0.07 | 1.00 | 0.73 | EigenThreader | | KSGNAPIYYTSLTRNPFAWMREALTSLSGVDTAVHFVFLSTVLGIFACLLLPTLLPLSMANITKKSSRAFLGAVYWISLVTYFFLWKAYKHVSSLRAQALMSRVAAASAAQSIRQYFIYFFVAVTILFYMLPKLLLFLSKAEGIPHAIRAASGKYFYFSVFNV |
5 | 4anrA | 0.18 | 0.14 | 0.80 | 0.39 | HHpred | | --------AISRPAERVKQWKEYRPIFISDARISRGVDFWNKHA-----------EDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSYRVMDALSTLGFDYPRADFFRKEREFLLLAREQQVDPLSLSYPQFMPDFDGDAIGSVASYFK------------- |
6 | 3qf4B | 0.15 | 0.12 | 0.84 | 0.42 | MRFsearch | | ---------ILEKPALKNPTATLRRLLGYPHTFTLIMVFVFVTVSSILGSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQ----DVVFRLRKELFEKLQRV------------PVGFFDRT-PHGDIISRVINDVDNINNVLG |
7 | 4knhA1 | 0.14 | 0.13 | 0.99 | 0.68 | FFAS-3D | | -LDEGHQASGKMKRSQSLTWSQIFKELEYPESALMLECYLRLIAKLAARKRLIMDEDFNLVDTILKLSPHRLRACIFYVLKALMIRKTHEELDAMWRWVEACMEMMFREFGTGFLTTLLVPPEGLNSLNDSVPFPEWLGSRTLGIEPYVDFVFDVFANRTKD- |
8 | 4k0dA | 0.12 | 0.10 | 0.81 | 0.62 | SPARKS-K | | -----------------IAASADAQLELIGPRAAAAASLESAVLHVSLTARAYALTP-EPAR-----DALQAALRRLEGAAARFAALPKSPEGAALSGRILAAVPPFEKAAVALGTAVATGG-DDSAIRAREA-------TLPPREELLSLLRTFGALQQAHD |
9 | 5xanA | 0.10 | 0.08 | 0.79 | 0.65 | CNFpred | | ---------------------VFVMLFAYYGLWFGLVGALGLLFSSIIILGILGGF--------ATLTLPGIAGLVLTIGAAVDGNVISFERIKEELARGKGIKNAIGAGYEHSTAAILDVNASHLLSALA-----LYNYSTGAVKGFAVTLIIGVIASTFSN |
10 | 6jrlA | 0.07 | 0.06 | 0.81 | 0.83 | DEthreader | | ------------------R-VSPHMHAYYPTST--GSASEAVLVAVLAAREQAVANYREHPELS-SEVRGR-LVAYMIVICVATLHVDAAYAGGLHFMLLRNHVRKHIELAKQFEQLVLKDSRFPKGDNEITTLLLRFVV------AWQEIESQLTDLQAE-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|