>PF08553 (354 residues) VNSQLAVGYKHDRSFVVRGSKIGVFKHTPNNNLEFSTNISKVETPEGKLFSPKKVMLHAE DTNMILQNEANPNSLYRMDLEYGKIVDEWKVHDDIQVNTFAPENKFAQMTGEQTFLGLSR NALYRIDPRLAGNKLVDSELKQYVSKNDFSAAATTEKGYIAVASNKGDIRMFDRLGINAK THIPALGDPIIGLDVSADGRWVLATCRTYLLLIDAMQKEGKNEGKLGFEKSFGKDSKPQP RRLGLTPSHVAQFQHETGVPLSFTPARFNTGEGVNETSIITATGPFIVTWNLKKVLRGNK DPYTIKRYAEEVKADNFKYGSDKNVIVALPNEVNMVAKQSFKKPTRESIATPVR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VNSQLAVGYKHDRSFVVRGSKIGVFKHTPNNNLEFSTNISKVETPEGKLFSPKKVMLHAEDTNMILQNEANPNSLYRMDLEYGKIVDEWKVHDDIQVNTFAPENKFAQMTGEQTFLGLSRNALYRIDPRLAGNKLVDSELKQYVSKNDFSAAATTEKGYIAVASNKGDIRMFDRLGINAKTHIPALGDPIIGLDVSADGRWVLATCRTYLLLIDAMQKEGKNEGKLGFEKSFGKDSKPQPRRLGLTPSHVAQFQHETGVPLSFTPARFNTGEGVNETSIITATGPFIVTWNLKKVLRGNKDPYTIKRYAEEVKADNFKYGSDKNVIVALPNEVNMVAKQSFKKPTRESIATPVR | |||||||||||||||||||
1 | 5ch1A | 0.08 | 0.07 | 0.89 | 1.33 | DEthreader | LAEFFDVKFYSAPVFAATSKKHAVICRLTQPCEIIQLI-RDDG-----NEANCASCWSKDQPLLCIAGN--EGNVKVYNVTEGKLYRTLVGHGGGINDL-ATSPANP----YIIASASDDTTIRIWSLAPEHE-KQPCVCILGGGHSYLLSVAFHDNGYVLSAGHDQVINLWALPVIYPHFSSEIHNNLVDCVAFY--GDLILSRACETIVLWRIEGFSSDDPIPGPDASYFTPPAMFTRLAQFH---TPDC-GV----QFFMR-FRMYHVPGKHPILAFANAKSKTFFWDLARFGAYDIKAHRSLAIAFVGRQVGWSP-EGEWCVVVGNNRALIYQRWG-------------- | |||||||||||||
2 | 3dm0A | 0.15 | 0.12 | 0.77 | 4.43 | HHpred | TDMVTAIATPIDNDIIVSASSIILWKLTKGVAQRLTGHSHFVED-----------VVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKVLSVAFSLDN-------RQIVSASRDRTIKLWNTL-GE-CKYTISEGGEGHRDWVSCVRFSPNTLIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKGVVLLWDLAEGK----------------------KLYSLEAN-SVI-----HALCF-----SP----NRYWLCAATEHGIKIWDLESKS----IVEDLKVDLKKCTSLNWSA--DGSTLFSGYTDIRVWGI---------------- | |||||||||||||
3 | 2ymuA2 | 0.13 | 0.10 | 0.75 | 0.49 | DisCoVER | HSSVWGVAFSPDGTIASASKTVKLWNRN-GQHLQTLTGHSSS-------VWG--VAFSPD-GQTIASASDD-KTVKLWNRN-GQLLQTLTGHSSVRGVAFSP---DG-Q---TIASASDDKTVKLWNR--N-GQLLQT-LT-GHS-SSVWGVAFSPDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDKTVKLWNR------------NG-QL----------LQTLTGHSSSV------RGVAFSPDG--------QTIASASDKTVKLWNR--NG---QLLQTLTGHSSSVWGVAFSPD--GQTIASASSDKTVK----L--W---------- | |||||||||||||
4 | 3iytA3 | 0.12 | 0.10 | 0.77 | 0.25 | MRFsearch | --AVYHACFSEDGQRIASCGTLQVFKAETEKLLEIKAHED-----------EVLCCAFSTDDRFIATCSV-DKKVKIWNSMTGELVHTYDEHSQVNCCHFTNSSH-----HLLLATGSSDCFLKLWDLNQ-KECRNTMFG----HTNSVNHCRFSPDKLLASCSADGTLKLWDATSANERKSINV---KQFFLNLEDPQERIMVAAKNKIFLFDIHT---------------------SGLLGEIHTGHHSTI-----QYCDFSPQ--------NHLAVVALSQYCVELWNTDSR----SKVADCRGHLSWVHGVMFSPD--GSSFLTSSDTIRLWETK--------------- | |||||||||||||
5 | 6iamA | 0.16 | 0.12 | 0.79 | 1.77 | SPARKS-K | TKAVSSVKFSPNGEWLASSSLIKIWGAYDGKFKTISGHKLGI-----------SDVAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNVFCCNFNPQSN-------LIVSGSFDESVRIWDVKT-GKCLKTLPAH----SDPVSAVHFNRDGLIVSSSYDGLCRIWDTASGQCLKTLIDDNPPVSFVKFSPNGKYILAATDNTLKLWDY----------------------SKGKCLKTYTGHKN---EKYCIFANFSVTG-------GKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTACHP--TENIIASAALTIKLWKSDC-------------- | |||||||||||||
6 | 5yzvA | 0.15 | 0.11 | 0.75 | 0.34 | MAPalign | --EAVAVAFSPGGSLLAGGSLIHVWDVASGDELHTLEGH---------TDWVRAVAFSPD--GALLASGSDDATVRLWDV---RA-VFEGHTHYVLDIAFSP-------DGSMVASGSRDGTARLWNVATG--TEH---AVLKGHTDYVYAVAFSPDSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVA----------------------SGEALHTFEGHTDWV-----RAVAFS---------PDGALLASGSDRTIRLWDVAAQ----EEHTTLEGHTEPVHSVAFH--PEGTTLASASEGTIRIWP---------------- | |||||||||||||
7 | 5nnzB | 0.11 | 0.08 | 0.78 | 0.28 | CEthreader | RNVVYAIAFNPYGDKIATGKTCKLWSVETGKCYHTFRGHT----------AEIVCLSFNPQST-LVATGSMDTTAKLWDIQNGEEVYTLRGHSEIISLSFNTS-------GDRIITGSFDHTVVVWDADTGRKVNILI-----GHCAEISSASFNWDCLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASAGTARIFSAAT----------------------RKCIAKLEGHEGEIS-----KISFNP--------QGNHLLTGSSDKTARIWDAQTG----QCLQVLEGHTDEIFSCAFNYK--GNIVITGSKDNTCRIWR--------------- | |||||||||||||
8 | 5mzhA | 0.12 | 0.11 | 0.88 | 1.27 | MUSTER | ILPLTNCAFNKSGDRFITGSY--------DRTCKVWNTFTGVFTLEGHKNVVYAIAFNNPYGD-KIVTGSFDKTCKLWDAYTGQLYYTLKGHQTIVCLSFNPQST-------IIATGSMDNTAKLWDVETGQERATLAGH-----RAEIVSLGFNTGGLIVTGSFDHDSRLWDVRTGQCVHVLSGHRGEVSSTQFNYAGTLVVSGSDCTSRLWDVRSGRCLSVKQGHTDEVLDVAFDAAGTKMVSADGSARLYHTLTGVCQHTLGEISKVAFNPQGTRLITASDKTCRLWDCDTG----ECLQVLEGHTDEIFSCAFNY--EGDFIITGSKDCRIWKALT-------------- | |||||||||||||
9 | 3dm0A | 0.16 | 0.12 | 0.77 | 0.75 | HHsearch | TDMVTAIATPIDNDIIVSASSIILWKLTKGVAQRLTGHSHFVED-----------VVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKVLSVAFSLDN-------RQIVSASRDRTIKLWNTL-GE-CKYTISEGGEGHRDWVSCVRFSPNTTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKGVVLLWDLAEGK----------------------KLYSLEAN-SVI-----HALCFSP---------NRYWLCAATEHGIKIWDLESKS----IVEDLKVDLKKCTSLNWSA--DGSTLFSGYTDIRVWGI---------------- | |||||||||||||
10 | 6e29D | 0.11 | 0.09 | 0.82 | 1.78 | FFAS-3D | -GHSTCVRFNRKGDFLASGRVDGTVV------IWDLETMGVARKLRGHSKNITSLS-WSRCGRYLL-SACQGWKVILWDLQDGKRYREVRFRAPVYGAELHPW------NHHQFAAALFEDQPMLVDITEPVEVRYVLPSVEDAKHMTTAIVYTASGDHLLAGTTKGRLNIIDARTREIIYSEKIASGIITTLRLTESGRELLVNADRIIRTFIVPNLSAADLDPIQLPL--------------------EHKFQDVVNRLSWNHVAFS---ATGEYVAASTYNNELYIWER----GHGSLVRMLEGPKEEQGVIEWHP-HRALLAACGLETGRI------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |