>PF08474 (252 residues) YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKR YCKNASPSSSTTSSYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLS TRCREMPQNLSTKPQDLCTARNPDMEVDENGTLDLSMNKQRPRDSCCPVLTPLEPMSPQQ QAVMSSRCFQLSEGDCWDLPVDYTKMKPRRVDEDEPKEITPEDLDPFQEALEERRYPGEV TIPSPKPKYPQC |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKRYCKNASPSSSTTSSYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCTARNPDMEVDENGTLDLSMNKQRPRDSCCPVLTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRVDEDEPKEITPEDLDPFQEALEERRYPGEVTIPSPKPKYPQC | |||||||||||||||||||
1 | 5yfpC2 | 0.05 | 0.04 | 0.75 | 0.77 | DisCoVER | YVALMEHERLLV-AE----------LAEDALETGCPHLLEIHFLLTSARDFQEQVVVM--AK------------------EATEDAQRTVMKLFSRLSGIISK------FDKLLDGLTYDIVEM-----ARAEQI--S------L-AIRLFKIYDLEIEKSDETPKVIEYPTNGLEISTRTAPRGY-KHFL-----ININNISFGEMREKYVGDQKFDVLDNMDWIF-NELIVKEHIANCCPPHWN------ | |||||||||||||
2 | 3hjrA | 0.03 | 0.02 | 0.77 | 0.67 | DEthreader | -PLGMDIGRS---STERCL-PGANQDQQWYLNGGIAGNDLNLWWATGVLGQGVNV---A--VVDDGKNVVGS--FLQKDWLYALGASRDNLLFQQTLKQGAA---YIKA---NL-VSALNADGVR--------SSYSS----EYGTDT---P-AMVTYNSNRGNCYNGMNSPSSGALLMSLRLLARSATRVDAK--WWFTYGFGVEAVQV---MVSLD-IELVSRSILLS--NS--------------MRML | |||||||||||||
3 | 5xmjA2 | 0.03 | 0.03 | 0.96 | 0.51 | CEthreader | GGMQAALGNAIMGDGDSPDVHFADTVKGSDWGCDQEVARIFADTAPIVMREVAHWGVPWNRVVPGKHTYYKGGKPFEAEEKAEKAGLIHARAFGGTAAWRTCYTADGTGRSVLNTLDTKCLQYG----------VTVHDRMQAEALIHDGGNCLGCIARCLRTGELVAYLATSTLIATGGYGRIYKATTNAVICDGGGQIIALDTGLVPMGNMEAVQHHYSMGGVRTNRDGAAYGLKGLFSAGESACWDMHG | |||||||||||||
4 | 3myrB | 0.05 | 0.05 | 0.95 | 0.58 | EigenThreader | HALDWVDSADPRATSELAQSISAWPKSSANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGGVPSPIDLDSDSALN---AKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGTFLFPRGAILDRDLSTIHEVDLEATGEI---QEFV-NHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDV-----SDGYSWLKAPRWKGRSVEVGP | |||||||||||||
5 | 3f1sA2 | 0.13 | 0.08 | 0.56 | 0.33 | HHpred | ---------------------WLTPFDPVTEVDTFHYKTIKVPMMYGAGKFASTFDK-NFRCHVL----------------KLPYQGNA---TML--VVLMEKMGDHLEDYLTTDLVETWL------RNMKTRNMEVFFKFKLVIEVDERGTEAVAGILS--------EIT---AYSMPPVIKVDRPFHFMIYEETSGMLL--------------------------------------------------- | |||||||||||||
6 | 2pffB | 0.16 | 0.03 | 0.19 | 0.68 | MRFsearch | -------------------------DDYGF------------------------------------------------GGGGGGGGGGGGGGGGQGSQEQGMGMDLYKTSKAAQDVWNRADN---------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6zxdy | 0.13 | 0.12 | 0.94 | 0.51 | FFAS-3D | LPYELRFKEPLPEYVRLVTEFSKKTGDYPSLDIQVLALTYLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPGGWITPSNIKQIQQELEVRVGCLTTDFAMQNVLLQMGLHVLARCHGCFKTTSDMSRVFCSHCGNKVTVSDDGTLHMHFSRNNPRGLRYSLPTPKGGKYAINPHLTE------------DQRFPQLRLSQKARQKTNVFAFVENDISSRSATLRRRLNPNASRKKFVKKR---- | |||||||||||||
8 | 5yfpB | 0.06 | 0.06 | 0.98 | 1.05 | SPARKS-K | NTTSSSNENPMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVELSYYLKINQLFDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGLTDSPTIIEMWLLILKYINDLWKICDQFIEFWEHIEKFLDGTYQNSIINEKRKENILIGDSNIIESYQKSLI-LKEEQINEVRLKGEEFITSVSQNLISFFTS--SQSSLPSSLKDSTGDITRSNKD-SGSPLDYGFIPPNCNGLSCLRYLPK | |||||||||||||
9 | 4qwvA | 0.16 | 0.03 | 0.20 | 0.32 | CNFpred | --------------------------------------------------------------------------------------------------------YVWITYAAVQSLATALERTGSEPLALVKDLKANGANTIGPLNWDEKGDLKG------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6r9tA | 0.08 | 0.05 | 0.63 | 0.67 | DEthreader | ---------ELLQHVKAHAT--GAGPAGIKAAEGESDKQRHAKLVQGVALGECQAAVTAVLK-L-QQRLAQ--------SDSL-------PPSTGTFQEAQSRLNEAAAGNNLRELETVRELLENPAAYVGRAMPGLECETAANS------------QFEPLTLAALLGGVDITIRVQELGECARRVSE----K-SHVAAQAGN------------------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |