>PF08440 (275 residues) AAFQCFMYDLPVMTGQVSVSLLSKCTREQARTMAAFELSPFTMSNLVAFDGTMHPAIHDL LKKFKLRDSTVVLRRTALPLRASASWYTVREYETIIGDLHIENKDVRIPFVANDLSNSLL EGLWDAIQCNRSDVSTTKLTTVSANKIAYTLKTDTSSIQRTISIIDDLLAEERKKQEMFT HHLSTTSGGYTFGLNAIAMCIKSRYAKGYCIENIATLTNVRNQLTEFSGMSEDQYTSEII QNYPDLTLVHHQSKQEIIRNLKLKAKYDQTLIASD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | AAFQCFMYDLPVMTGQVSVSLLSKCTREQARTMAAFELSPFTMSNLVAFDGTMHPAIHDLLKKFKLRDSTVVLRRTALPLRASASWYTVREYETIIGDLHIENKDVRIPFVANDLSNSLLEGLWDAIQCNRSDVSTTKLTTVSANKIAYTLKTDTSSIQRTISIIDDLLAEERKKQEMFTHHLSTTSGGYTFGLNAIAMCIKSRYAKGYCIENIATLTNVRNQLTEFSGMSEDQYTSEIIQNYPDLTLVHHQSKQEIIRNLKLKAKYDQTLIASD | |||||||||||||||||||
1 | 3hdiA | 0.07 | 0.05 | 0.74 | 0.77 | DisCoVER | RIITEKMVSIGIWVGTGSRYESAENGISHFLEHMFFKGTN-SAQEIFIVAFTSKE-YT--C---YYAKVLDDHAGQAIDTLS-------------------------DMFSTFQLERKVVF-HSLGYP-ILGYMRFYTGDYVVISVAGAHLCGYP--GL--P--IG----------DKDVYALVLLNNVLGGSMSSRLFQD----------IRRGLCYSVFSYH--SS----FRDSG-ML--TIYA-GTGHDQLDDLVYSILSLESTNSRMSNG- | |||||||||||||
2 | 1w27A | 0.03 | 0.02 | 0.67 | 0.67 | DEthreader | -LA-AE-----AGKPEFDTHKKHHP---GQ----------------I--EAAA-----------------IMEH-ILDG---S-AY-V--KAA---Q-K-LH-EMDPL-----------------QKPKQ-----------IGMFAQELNDFGLP--SGGRNPSLDYGFKGAEIAMA-SYCSELQFLANPVTNSSKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVVSARANPAIPNRIEEYLYKFVRKELGTEYLPGEEKVFIAMSII | |||||||||||||
3 | 5k3gA2 | 0.06 | 0.06 | 0.99 | 0.46 | CEthreader | YHLNNEVLGYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMAIYGVAIGGVMLLQLARYLVKSAALVKSGKASQLGPLV-AYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLH-VNYELLDV-ATYALEDGFMSSTQLDYVRDQL | |||||||||||||
4 | 4aurA | 0.08 | 0.07 | 0.93 | 0.70 | EigenThreader | IEKQAAINSLLQLRGLEDDLQKVTSAINAIESDVLRIA------LLGAFSDGKTSVIAAWLGKYISEAHLIFYV--VDATNPLKESH--SDIVKWVLRDLNKLSSTIFVINKDEVTS----LIKKANLKGKLQRAADLTAQECEQLNIVCVASRHLDELNTFVEKNDEDSNDIKQSRIEVKRLAGELFEELNLESVDRFFEQSTAVSQRLSDDITRQLSSSESFLSGLGEGAFRSLGSPATLKTTILAA-----RDTIGKLTGYVYKFKPWEATK | |||||||||||||
5 | 3ns4A | 0.14 | 0.08 | 0.53 | 0.38 | HHpred | --------------------------------------------------------------------------------------------------------DVYKWNFLDKVID-ITTNFVSNTIRLLQVPPFSLAGS-----------KRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDS-D---LRENTSYKRV-KRHADNNIDQLLKFIKLL----APLDS--ADDYYETYS--KLTNNPDSAVWSFVLALKGPWDLALWKK- | |||||||||||||
6 | 6gmhQ | 0.10 | 0.06 | 0.61 | 0.43 | MRFsearch | --------------GGGVEAMQAESCYQLARSFHVQQAFQYYYQATQFASSSFVLPFFGLGQMYIYRG-----------------------------------------------DKENASQCFEKVLKAY------------------------PNNYETMKILGSLYAARDIAKGHLKKVTEQY-----PDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQA---DVPPEILNNVGALHFRLGEAKKYFLASLD------------- | |||||||||||||
7 | 1z6oX | 0.09 | 0.06 | 0.65 | 0.72 | FFAS-3D | --------QIPKDWITMHRNSMRQQIQMEVGASLQY----LAMGAHFSKDVVNRPGFAQLFFD------------------------AASEERE------------------------HAMKLIEYLLMRGELTNDVSSLLQVR-------PPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQY-KGQRDLAGKASTLKKLM-----------------------DRHEALGEFI-----FDKKLLGID | |||||||||||||
8 | 6w2rA | 0.12 | 0.08 | 0.73 | 0.59 | SPARKS-K | ------------GTTEDERRELEKVARKAIEAAREVREQLQRALEIARESGT--KTAVKLALDVALRVAQEAAKR-------GNKDEAAEVVVRIAEESNN-----------SDALEQALRVLEEIAKAVLKSEK-------------------TEDAKKAVKLVQEAYKAAQRAIEAAKRTIKLAIKLAKLAARAALEVIKRPKVNEALKKIVKAIQEAVESLREAEESG-DPEKREKAREREAVERAEEV----------------------- | |||||||||||||
9 | 4fgvA | 0.10 | 0.08 | 0.85 | 0.60 | CNFpred | LVLVSVLKQEW--WPTFINEIVSACHSSLSVCENNMIILRLLSEEVFDYS-AEFSMIFQLCQEILNSATQPSLIKATLETLRFCNWIPLGYIFET----------PLIDTLRTRFVPEFRNVTLQCLTEIGG--LQTGGPGQ-PHTYDEQL---IKMFTEVLTTISNIIPLQMDLKATYPNSNSRDQE-FIQNLALFLTSFFTMHLPLIENLNRDFLTHGHFYLIRISQI----DDREIFK--ICLDYWLK-LVQELYEEMQ------------- | |||||||||||||
10 | 5k3gA | 0.06 | 0.04 | 0.69 | 0.83 | DEthreader | V-HLNK-----I-QEGDNPDLTAERLTA-TFDTHAMAA-------------------Q--IYGGE----------------A-LAEILKVLTQRM-SEIIDPT-------------DAGELYHLNNEGIIMLYALIAYSVLQTQQHFPIA------PNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGE-K--EI-AWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKE-ALS-DLLHLHVNYELL--DV--------TY--E--SL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |