Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | LEPMVGNNGVRAQVTADLDFTRTERTEETYNPDLPALRSEQVSEEQMGAGGGAVGVPGTLSNTPPGPQAEGAGMSQSNSSRRSTRNYELDKTISHTRLATGTIRQLSIAVVIDDKRVPGPDGTATREPWTEEELDKFTTLVREAVGFDARRGDSVQVINAAF |
1 | 6scnA | 0.32 | 0.23 | 0.72 | 0.83 | DEthreader | | LSPIVGNGNVHAQVTAQLDFAKEQTEEH---------TLRSRQLNISE-Q--V--------------------PRSTQRNETSNYEVD--RTIRHTKMNVGDIERLSVAVVVNY------------KLPLTAQMKQIEDLTREAMGFSDKRGDTLNVVSPFS |
2 | 6scnA | 0.49 | 0.30 | 0.62 | 0.83 | DEthreader | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNATL--------------------------------------------------YEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
3 | 6scnA | 0.45 | 0.35 | 0.77 | 4.81 | HHpred | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDTLRSRQLNISEQ---------------------------VPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
4 | 5wc3A | 0.09 | 0.06 | 0.72 | 1.72 | DisCoVER | | KEILEGVDDVSVVVNVDATSLKVYE-------------KNKSNKNTTTEETDKE-----------------GGKRSVTDQSSEEEIVMNGDKETPVVVQTKKPDIRGVLVVAQGVD--------NVQIK-----QTIIEAVTRVLDVPSH--RVAVAPKKK- |
5 | 6scnA2 | 0.45 | 0.35 | 0.77 | 1.72 | MRFsearch | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNKATLRSRQLNISEQV---------------------------PRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
6 | 6scnA2 | 0.45 | 0.35 | 0.77 | 2.56 | SPARKS-K | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPSKATLRSRQLNISEQVPR---------------------------STQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
7 | 6scnA | 0.44 | 0.33 | 0.77 | 1.05 | MAPalign | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSASKATLRSRQLNISEQ---------------------------VPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNY-----------KLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
8 | 6scnA2 | 0.45 | 0.35 | 0.77 | 1.56 | CEthreader | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNKATLRSRQLNISEQV---------------------------PRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
9 | 5wc3A | 0.16 | 0.12 | 0.73 | 1.26 | MUSTER | | LETIIGVDDVSVVVNVDAT------SLKVYEKN--KSNKNTTTEETDKE----GGKR----------------SVTDQSSEEEIVMIKNGDKETPVVVQTKKPDIRGVLVVAQGVD-------------NVQIKQTIIEAVTRVLDVPSHR---VAVAPKKI |
10 | 6scnA2 | 0.42 | 0.33 | 0.79 | 1.91 | FFAS-3D | | LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQ-----------------------VPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK-----------LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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