>PF08193 (233 residues) MAPSSKSAAAAKDRRKSNNNSAGLVTLRVPSAKLRAIVDPDYVKEDSPVKESPATSTTLP AATVNSTTENASDSSPNTPAAGTPAPPSVSMGPPAEGPKKKGVKRGAAALNGEPKVRGKP GPKKKQRLEDGTIEGGRASLGAHKLGPKANQGAINAGLRALDRSGKPCRKWSRGGFTMKS FTGVVWEIPRWVAPPKISPETSTDSSSAPVSVDGSSKENKDSASQQLKSDTSN |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MAPSSKSAAAAKDRRKSNNNSAGLVTLRVPSAKLRAIVDPDYVKEDSPVKESPATSTTLPAATVNSTTENASDSSPNTPAAGTPAPPSVSMGPPAEGPKKKGVKRGAAALNGEPKVRGKPGPKKKQRLEDGTIEGGRASLGAHKLGPKANQGAINAGLRALDRSGKPCRKWSRGGFTMKSFTGVVWEIPRWVAPPKISPETSTDSSSAPVSVDGSSKENKDSASQQLKSDTSN | |||||||||||||||||||
1 | 3fewX | 0.05 | 0.03 | 0.72 | 0.68 | DisCoVER | ------------------------------------------------VPPYVDGQVRITITN------GLVKTPVYGVPGAGGNSDVQGGYIPENPNDEVARKW----DKNNLPREIDVSI---DGFKYRVTLNDNGRAIGILRTGRQAKQQAE---AWDRLPPNVRKFDVDVYLVVLDDYGNVLQAAAYVFYIQDVLNKAAEVISKSLAREIADDVKNFQISKAFIASAV- | |||||||||||||
2 | 1no7A | 0.09 | 0.06 | 0.70 | 0.67 | DEthreader | -----AGPAADMQQ----------------RVV-GN--LAARDAGLGAMATIVRAFDDRYAVYLLQAAIHGSAFVNDYSWDCLMRACRVS---AGGH-D-PVYAAAC-------------------------NT-QARADAAPHRGADWTVHHKIYYYVMVPAF-SRGRCCTAGVFATTLLCALHAGILLPALFPLVPPAL----------GANYFSIRQPVVLAGYF----- | |||||||||||||
3 | 6efrA1 | 0.07 | 0.06 | 0.91 | 0.49 | CEthreader | --------FPEPNVYITADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNE--------KRDHMVLLEFVTAAGISMSKGEELFTGVVPILVELDGDHKFSVRGEGEGDATNGKLTLKFTLVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFPP------ | |||||||||||||
4 | 1kt1A | 0.06 | 0.06 | 0.95 | 0.57 | EigenThreader | NGKLAVIKAWDIGVATMKKGEICHLLCAYGA-----TGSLPKIPSNLEDGGGEGYSNPNEGAGEGEDHDIPIGIDKALEKMQREPRYGFGEAGKPKFGIEPNAEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEAAFLNLAMCYLKLKALGLDSANEKGLYRRGEAQLLMNE------FESAKGDFEKVLEVNPQNFMCQKKAKEHNERDRRTYANMFKKFAEQD | |||||||||||||
5 | 6dgvA | 0.12 | 0.07 | 0.63 | 0.40 | HHpred | ---------------------MKFLASASSAKGQDDFSNLTAY--------APVNIDSVQR---LDL-ANVYIT-ADKQKNGI-MANFKIRHNVEDGSVQLAYQQNTPIGDGPVLLP---DNHY--LSTQSVLSK-----DPNEKRDFVTAAGITLGMDELYKGG------MSKGEEL--FTGVVPIL----------VELDGDVNGHK------------------------ | |||||||||||||
6 | 4wj1A | 0.14 | 0.03 | 0.25 | 0.48 | MRFsearch | --------------------------------KAAELSRQNGSDAPPPAAEAVVPDSGIPGPLA----------------IPSEYPSAAAAAD---------------------------------------------------EDWEAAARIIHSG---------------------------------------------------------------------------- | |||||||||||||
7 | 3iz5D1 | 0.15 | 0.09 | 0.57 | 0.38 | FFAS-3D | MATQTRPLVSVALEGDMATDNSSSLALPLRPDVVRFVHRLLSCNKRQPYAVSRR-----------------AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRG-----GRMAPTKTWR------------KWHRRVNVHLRRVAVASALAATSVPSL------------------------------------------------------------------- | |||||||||||||
8 | 4k0mC | 0.11 | 0.08 | 0.69 | 1.36 | SPARKS-K | IDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKEKIKEAEEAGADYEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------AAAAAAAAAA-------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- | |||||||||||||
9 | 3zlfA | 0.19 | 0.04 | 0.20 | 0.32 | CNFpred | ----------------------------------------------------------------------------------------------------------------------------------------------GKLGANAILGVSIAVARAAADYEVPLYTYLGNTKVLPTPMMNIINGG-------------------------------------------- | |||||||||||||
10 | 6sytA | 0.09 | 0.06 | 0.63 | 0.67 | DEthreader | ----GGGGGGGGGGGGGGGGGGGGGI-GSPA---D-------EKE-VASAYTYLTWAQACLLLIPLDVVLSN------------------------------VISFILGNSHSQWNSPDPRELKSIEVQLLRSVC--TAITVVYLKQTSRI-AIGPLRLSTTVSQSL------------E--V-------------------DS-YPYL-FKGLE-DL-HLDERIQFLLTLEK | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |