>PF07919 (604 residues) VILKGEDSVSCLAASFVFAKSEGNVGEPLQSQLVIRSCAQAGSSPIRLTEVKVVFEGSIR PIKLLPSEDATSSSSTSCEIISVPLQDSAKVDASSVRSPTAGLSLMAGFTNLSFNPKQTR AFNLVSVPREPGEARVASITLRIEEENFDLACIISEQNREESVWWRMGKQGPISRRTGKD RDTSVAQILPKPPKVRITTPNLRNHYYTDEKVVFDVQIDNDEDEAAEIDVEMKLFGHTGT SATFSWINETAADSEASEDAGSSTPSTPIEGDSSALSKQCTVGTLGRGASRTLSVLFTNT TQPLDYEVEISAFYHLVSDIETQIFKTVSLDLSFIRPFEANYEFLPRIHPAPWPDFFHCD DSPSEDSEAKEQKLNGLQQLWCLNSKMVSFALEPLIIEEVNVTLLGITAGNVCKIGPETL KSPETPTIGPEELRESEFAIEIQRHALDDRQASTLNLSLDIRWRRPDDDDGGPQSSSTTS TLPIPRFLLPLGEPRVLASATPSPTFPGFLHLDYTLENPSMHFLTFNLTMEASDQFAFHG PKSTTVQLVPLSRHTVRYNLLANVTGTWIQPQLVVVDSYFNKTLRVLPTEGMRGDKKGIL VWVD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VILKGEDSVSCLAASFVFAKSEGNVGEPLQSQLVIRSCAQAGSSPIRLTEVKVVFEGSIRPIKLLPSEDATSSSSTSCEIISVPLQDSAKVDASSVRSPTAGLSLMAGFTNLSFNPKQTRAFNLVSVPREPGEARVASITLRIEEENFDLACIISEQNREESVWWRMGKQGPISRRTGKDRDTSVAQILPKPPKVRITTPNLRNHYYTDEKVVFDVQIDNDEDEAAEIDVEMKLFGHTGTSATFSWINETAADSEASEDAGSSTPSTPIEGDSSALSKQCTVGTLGRGASRTLSVLFTNTTQPLDYEVEISAFYHLVSDIETQIFKTVSLDLSFIRPFEANYEFLPRIHPAPWPDFFHCDDSPSEDSEAKEQKLNGLQQLWCLNSKMVSFALEPLIIEEVNVTLLGITAGNVCKIGPETLKSPETPTIGPEELRESEFAIEIQRHALDDRQASTLNLSLDIRWRRPDDDDGGPQSSSTTSTLPIPRFLLPLGEPRVLASATPSPTFPGFLHLDYTLENPSMHFLTFNLTMEASDQFAFHGPKSTTVQLVPLSRHTVRYNLLANVTGTWIQPQLVVVDSYFNKTLRVLPTEGMRGDKKGILVWVD | |||||||||||||||||||
1 | 3hs0F | 0.10 | 0.07 | 0.69 | 1.13 | EigenThreader | ----------ALYTLITPA--VLRTDTEEQILVEAHGD----STPKQLDIFVHDFPRKQK---------------------------------------------TLFQTRVDMNPAGGMLVTPTIEIPANQYVVVQVTGPQVRL---EKVVLLSYQSSFLFIQTDKGNFFWPYNLPDLVHSPENAYFDVRKYVRLQPSEKF--------FYIFHVSITAGEEVEGVAFVLFGVKID-----AKKSI-----------------------------PDSLTRIPIIDG-DGKATLKRDTFRSRFGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFYFKPGM----------------------------------PYELTVYVTNAHVPVVSE------------------------AFHSMGTTLSDGTAKLILNI--------PLNAQSLPITVRTNHGDLPRERQATKSMTAIAY--QTQGGSGNYLHVAITSEIKPGDNLPVNFNVKGNQIKYFT-YLILNKLIPSFRFV--AY-YQVGNN-EIVADSVWVDVKDTC--MGTLVVKGDNLIQ-----MPGAA---MKIKLEGDP | |||||||||||||
2 | 2pn5A | 0.10 | 0.09 | 0.91 | 1.24 | FFAS-3D | ----FNSQLSKVDLLLKLELSVLNVTKMVDVRINFNMPEDLTAGNYKIKEAELVYLSKSISGLIQVDKP-VFKPGDTVNFRVIVLDTELKPPARVK------------SVYVTIDPQRNVIRKWSTAKLYAG---VFESDLQIAPTVWNISVEVEGEELVSK----------------------TFEVKEVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLGQVELRFDNFAMDADQEQYTNRTVVKQSQITVYRYAYRVELIKFRPGLPFKCALQFTHHDGTKGISGKVEVETTTTSDNDGLIKLELQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMFMRPNKQPKYLLQLNATTVAGRTVVYDFADLAFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLGRSGSRKLIEVVSWYDPVYGLGIIKKPIQFTT---------VQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEDLSYTKSVSVPPKVGVPISFLIKARKLGEMAV-RVKASIMLLEKVIRVMPESLVQPRMDTRFFCFD | |||||||||||||
3 | 2pn5A | 0.09 | 0.09 | 0.93 | 1.10 | SPARKS-K | ---------LLVVGPKFIRANQ-------EYTLVISNFNSQLS------KVDLLLKLE----------LSVLNVTKMVDVRRNMNRMINPEDLTAGNYKGQRGFSFHKEAELVYLSKSISGLIQVFKPGD----TVNFRVIVLDTESVYVTIRDPQSTAKLYAGVFESPTPMLGVWNGEELVSKTFEVKEVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLGQVELRFDNFAMDADQQDYTNRTVVKQSQITVYRYAYRVELPQFRPGLPFKCALQFTHHDKGISGKVEVQLSIHFNAVDGFFFYEDVNKVIKLELKILMRFMVTCTESKGNIIDAGFMRPNKQPKYLLQLNATEKMIPRAKILIATVAG--RTVVYDFADLAFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDGFHENEFDISLGLFARTLILFDSQESWLWKNVSRKLIEVVPDIQFTVQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVAQTEFVGRPNKSVSVPPKVGVPISFLIKARKLG-----EMAVRVKALEKVIRVMPESLVQPRMDTRFFCFD | |||||||||||||
4 | 4d93A | 0.07 | 0.05 | 0.74 | 2.62 | CNFpred | KMVDVR---RNMNRMINFNMPEEL--TAGNYKITIDGQR---GFSFH-KEAELVYLSKSISGLIQVDKPVFK--GDTVNFRVILLDTELKPPA------------RVKSVYVTIRDQRNVIRKWSTAKL---YAGVFESDLQIV-GVWNISVEVE----GEELV------------------SKTFEVKEYLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLD-DDKLNQKKELTV-------------------------------------YGKGQVELRFDNAMDADQQDVRVKVSFIEQY-TNRTVVKQSQITVYRY-AYRVELIKES--------PQFRPG------------------LPFKCALQFTHHDGTPAKGITGKVEVSDVGFETTTTSD---------------NDGLIKLELQPSE--------GTEQLGINFNAVD---------GFFFYEDVNKVETVT---DAYIKLELKSPIKRNKLMRFMVTCTERM---TFFVYYVMSKGNIIDAG-TKYLLQLNATMIPKAKILIATVAGRTVVYDYADLDFQELRNNFDLSIDEEIKP-GRQIELSMS | |||||||||||||
5 | 2pn5A | 0.08 | 0.07 | 0.85 | 0.91 | DisCoVER | -------------LLVVGPKFIR-ANQEYTLVISNFELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPSVYVTIRDPNVIRKWFESDLQIAPTPMLGVWNISVEVELV-----SKTFEVKEYTVDAYIKLELKSPIKRNKLMRFMVTCRMTFFVYYVMSKGNIIDAGFMRQPKYIATVAGTLRNN-FDL-S-IDEQEIKPGRQIELSMSG-R---PGAYVGLAAYDKALLEDIGQVFDGFHEN---EFDIFHSLGLFARTLDILFDSSWLWKNV-SIGR--SGSRKLIEVVP-DTT-TSWYLTGFSIDPV--YGLGIIKKPIQFTTVQPFYIVENLP-------------Y--SI------------KRGEAVVLQFTLFNNLGAEYIAD-VTLYNVAN--QTEFVGPNTDLSYTKSVSVPPKVGVPISFLIKARK-------LGEMAVRVKASIM----------LGHETDALEKVIRVMPENRFQLDLEKQNTGSDY-ELRLKVCASYIPRRSNMALIEVTLPSGYVVPISVVLYYDNMGSERNCFTLTAYRRF---KVAAYVVVYDYYNTNLNAIKVYEVDKQNLCICDCPA- | |||||||||||||
6 | 1f13A | 0.07 | 0.06 | 0.88 | 0.67 | CEthreader | NEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLYVMDRAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHVVENVDATHIGKLIVTKQIGGDG----------------MMDITDTYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAV----------------------------LGKDFKLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFD---VTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETR-------------DVLAKQKSTVLTIPEIIIKVRGTQVVGSDMTVTVEFTNPKETLRNVWVHLDGPG--VTRPMKKMFREIRPNSTVQWEEVCRPWVSGHRKL-IASMSSDSLRHVYGELDVQIQRR---------- | |||||||||||||
7 | 4p99A | 0.07 | 0.04 | 0.61 | 1.12 | EigenThreader | ------EATAGTVTVNAITSDDVINAAGTVAVSGTATG------------------------------GDIAEGDTVTLEING-------------------------ETYTTTVDNGEWSVDVAGSDLAADT--AFDAVVTSSDAAGTTGSSTH-------------------------------TVDTEATAGTVTVAITSDDVINAGTVAVSGTATGGDIAEGDTVTLEIN--------------------------------------------GETYTTTVDANG-EWSVDVAGSDLAADTAFDAVVTSSD-AAGNTVDTTGSSTHTVDTEAGTVTVNAITSDD------------------------------VINVAVSGTATGGDITVTLEINTYTTTVDANG---------------------EWSVDVAG---------SDLAADTAFDAVVTSSDAAGN-------TTGSSTH---TTEATAGTVTVNAITSDDEAAGTVVSGTATGGDIAEGDTVTLEING--------ETY-TTTVDANGEWSVDVAGLAADTAFDA--VVTSSDAAGNGSSTH-----------TVD--- | |||||||||||||
8 | 2b39A | 0.11 | 0.10 | 0.91 | 0.77 | HHpred | --------LQSGYLFIQTDKTIYTPGSTVLYRVFTVDHKL---LPVG-QTVFITIETPDGIPVKRDSSNQFGILTLSWNIGVWKIKAY-----------YEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEDDDLKVAFVIFGVQDGNGEAILKRQVLLNVQPSRADALVGKSISATVGVEAERTGIPIVTSPYQIHFT-K-T-PKFFPAMPFDLMVYVTNPDGSPAHIPVVTQGSTQDDGVAKLSINTQNKDPLTITVKKDNRTMYNTGNSNNYL---HLSRVELKPGETLNVNFHLR-TDPGAKI---RYYTYMIMNKGKLLKVGRVVLPLTITSDFIPSFRLVYTLIQREVVAWVDVKDTLVVKNGEKHHRP---GQQI--TLKIEADQGARVGLVAVDFVLNKKNKLIGCTPGSGRNYTDAGLTLKTGDAESWLWTVIDLKQ-------ADKNGTKLMNVFLKDSI-----TTWEILAVSLPEVT-VMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAELKVRVELLYNPAFCSLATHQQTITIPARSSVAVPYVIVPLKIGLHEV-EVKAAVYFIKKTLKVVPEGVRVNKTAVRTL--- | |||||||||||||
9 | 6ysqA | 0.12 | 0.09 | 0.77 | 0.52 | MRFsearch | ----------ESNSSTQFEVKKYVL---PNFEVKITPGKYILTVPGHLDEMQLDIQARVAYVRFGLLD----EDGKKTFFRGLESQTK----------------LVNGQSHISLSKGLRLYVAAAIIESGGEMEEAELTSWYFVSSPFSLDLSKT------KRHLVP-------------GAPFLLQALVRGIPVKVSATVQDIQQNTDGSGQVSIPIIIP-QTISELQLSVSAGSPHPAIARLTVAAPP-----------------------SGGPGFLSIERPRVGDTLNLNLRAVGSATFSHYYYMILSR--------GQIVFMNREPKR----TLTSVSVFVDHH---------------------------LAPSFYFVAFYYHG-DHPVANSLRVDVQAGAEGKLELSVDG-------AKQYRNGESVKLHVALGALDTALWLWRVETVDRFQILTLWLP-----DSLTTWEIHGLSLSVQLRVFREFHLHLRLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGLAQQVLVPAGSARPVAFSVVPTAAAAVSL-KVVARGSAVSKVLQIEK--------EGAIHREE | |||||||||||||
10 | 6ysqA3 | 0.12 | 0.11 | 0.94 | 1.18 | FFAS-3D | --------KPRLLLFSP---SVVHLGVPLSVGVQLQDV--PRGQVV---KGSVFLRNPSRNNVPCSPKVDFTSSERDFALLSLQVPLKDAKSHSPWLKDSLSRTTNIQGINLLFSSRRGHLFLQTYNPGQRVRYRVFTITVMVENSHFQDDFVIPDISEPGTWKISARFSDG-----LESNSSTQFEVKKVLPNFEVKITPGKPYILTLDEMQLDIQARYIYGKPVQGVAYVRFKTFFRGLESQTKLVNGQSHISLSKAEFQDALEKLNMGITDLQGLRLYVAALVPGAPFLLQALVREMSGSPASGIPVKVSATVSSPGSVPEVQDIQVSIPIIIPLQLSVSAGSPHPERPDSRPPRVGDTLNLNLRAVGSGATFSHYYYMILFVAFYYHGDHPVANSLRVDVQAGACEGKLELSVDGAKQ-----YRNGESVKLHLETDSLAYAAGSKSHKPLNQILTLTWEIHSKTKGLCVATPVQLRV--------FREFHLHLRLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLGGGLAQQVLVPAGSARPVAFSVVPTAAAAVSL-KVVARGSFVSKVLQIEKEGAIHREELVYEL--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |