>PF07887 (276 residues) LRLIFSKNLSLPIFTGSKIVDIENNPLQVLLVDTSVAGTDRMSLVSFAHPIKIEIVVLDG DFPLGDCDAWTAEEYDSKIVKERTGKRPLLAGEVTITMREGVATIAGDIEFTDNSSWIRS RKFRIGAKVSPGSNHQGARIYEAMTEAFVVKDHRGELYKKHHPPMLNDEVWRLQKIGKEG AFHKKLQSEGINSVQDFLKLSVVDPQKLRTILGAGMSDKMWDATIKHARTCVLGNKLYLL KGNNLAIFLNPVCQLVKAEIDGHLYHTRDLNNLNRV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LRLIFSKNLSLPIFTGSKIVDIENNPLQVLLVDTSVAGTDRMSLVSFAHPIKIEIVVLDGDFPLGDCDAWTAEEYDSKIVKERTGKRPLLAGEVTITMREGVATIAGDIEFTDNSSWIRSRKFRIGAKVSPGSNHQGARIYEAMTEAFVVKDHRGELYKKHHPPMLNDEVWRLQKIGKEGAFHKKLQSEGINSVQDFLKLSVVDPQKLRTILGAGMSDKMWDATIKHARTCVLGNKLYLLKGNNLAIFLNPVCQLVKAEIDGHLYHTRDLNNLNRV | |||||||||||||||||||
1 | 4cu6A2 | 0.08 | 0.03 | 0.35 | 0.71 | DisCoVER | PAAVRLIKEDHAIAADDLTYIY----YEIVDS--------GNVVP--TANNLVRFQLHGQ---------------------------GQLVGVWIRKAFNGKG--VAIVKSTEQ---A--GKFTLTAHSD--------LLKSNQV-TVFTGKK--------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 2vcaA | 0.04 | 0.03 | 0.68 | 0.67 | DEthreader | NIMTMWYFLCAMNG-----VLDIIGQ------------------SGPAY-AW--------NPVGNFYGVDPHEQNWGDLFSEPD---WNMLHNFGG--------RMGMDAAPLATIPALMVGIGITPEA-------------------LFDMTWDYERTNKEIL---EAWNII--L------DTAYKKRN--------GAAESIIKHSKIVY---D-K-SEFEKAIEIFANYKSDAYFAKLIKLERVLSTR--PEFLWSGEYPTEASNENLGELAI | |||||||||||||
3 | 1y1uA3 | 0.10 | 0.06 | 0.57 | 0.77 | CEthreader | STFIIEKQPPQVLKTQTKFA------ATVRLL-------VGGKLNVHMNPPQVKATIISEQ---------QAKSLLKNENTRNECSGEILNNCCVMEYHGTLSAHFRNMSLKRESV--TEEKFTVLFESQFSVGNELVFQVKTLSLPVVVIVHGSQDHNATATVLWDNAFAEPGRVPFAVP----------------------------------------------------------------------------------------------- | |||||||||||||
4 | 1uusA | 0.10 | 0.08 | 0.84 | 0.75 | EigenThreader | VALVLKP--FPVVISKGKQ--LGENQLVVLVLTGARSNFHING---------PVKATMICDS--------------------HPNPTTPLEMDSQPIYPATLTAHF-PLKFLAGTRKCSVNL-KFGVNIRD------NVTTTVESDAVVITNECQRHFLIATKQDPVR----PKRPLSSYDLKYIQTHFFGNRSQDFDKFWVWFGKSMQTLRYQRHISTLWQEGQEVNDALQDPGTFIIRFSERNIAYIGVQFVNLLQWTKDTLKLHTALGSFAPK | |||||||||||||
5 | 4n6rB | 0.14 | 0.08 | 0.55 | 0.36 | HHpred | WSLQVVQQPIARMC-GFG--DKDRRCIRLIVKDAQTQK---EVDINDSSFYVVMADLWNADGTHE----V-------NLVKH-GMFTRNLIGCLSASLKIGVWFVLQDLSVRT------EGIFRLKFSFVNVGKSTAPILASTFSEPFQVFSAK------KFPG-----------VIESTPLSKVFANQGIKIP---------------------------------------------------------------------------------- | |||||||||||||
6 | 4n6qA | 0.10 | 0.05 | 0.46 | 0.47 | MRFsearch | -------------------------IVQIRVREEGTYLAQHYLQS---PYFFMSCSLYDAQEDAPASIP----------------PSTALTGTLVSSLTDGGFFVWGDLSIK------VEGDFRLKFSLFEMRKTDVVFLKSIVSERFTVSPPK-----------------SFPGMAESTFLSRSFADQGVKLRI--------------------------------------------------------------------------------- | |||||||||||||
7 | 4n6rB | 0.12 | 0.07 | 0.57 | 0.51 | FFAS-3D | WSLQVVQQPIRARMCGFGDKDRRPITIRLIVKDAQTQKEVDINSLDS-SFYVVMADLWNADGTHEVN------------LVKHGMFTRNLIGCLSASAKIGVWFVLQDLSVR------TEGIFRLKFSFEVINKGTAPILASTFSEPFQVFSAK-------KFPGVIE----------STPLSKVFANQGIK------------------------------------------------------------------------------------ | |||||||||||||
8 | 2hz6A | 0.08 | 0.07 | 0.86 | 0.74 | SPARKS-K | --------------PETLLSTLDG---SLHAVSKRTGSIKWTLKEDPVLQVAFLPDPNDGSYTLEGLTKLIPELVQASPCRLYMGK-----KQDIWYVIDLLGRTEYTITMYDTKTRELRWNATYFDYAASLPDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR-------KVMHINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKSKL--TPTLYVGKYSTSLYASP-------SMVHEGVAVVYWLLIGHHE | |||||||||||||
9 | 2apoA | 0.11 | 0.08 | 0.71 | 0.60 | CNFpred | --------------------------TGVLPVALE--RATKTIPMWHIPPKEYVCLMHLHR-------DASEEDILRVFK--------EFTGRIYQR-RIRKIHELELLDKDG-------KDVLFRVKCQSGT-AHMQELRRTKSGCFEEKD-----------------AVYLQDLL---DAYVFWKEDDEEELRRVIKPMEYGLRHLKKVVV------KDSAVDAICHGADVYRGIAKLSK-ETVLVETLKGEAVAVGK--ALMNTKEILNADKG | |||||||||||||
10 | 2b39A | 0.10 | 0.07 | 0.66 | 0.83 | DEthreader | GYLFIQTDKTIYTPG-STVL------YRVFTVDH------KLLPV----GQTVFITIETPD----------------GIP---------V-KRDSKSSQQFGILTL-SWNIPELV--N-MGVWKIKAYYE------DSPQQVFSA-EFEVKEYV-Q----PYSVVVPEVRV-----KHLIQTYGGGVVTVYHA--K--LKGKVSCKKFD------ATMSILDISAVKRFYHP-MLDDFDEYIMVEKFISHI-----KLKEGAH------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |