Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LVAQALVLHVIERAIPVPFITPGAKLGLANLVTVIALYTFGFKETFAIVVLRIIMAALLGGSLSSFLYSIAGGILSFFVMFVVMQLGEENVSAIGVSVAGAVFHNIGQVLVASMIVQNIRIVSYLPVLMVAGLGTGIFIGLTARYL |
1 | 3p5nA | 0.14 | 0.14 | 0.98 | 1.33 | DEthreader | | LSAIAFVLTFIK--F-PIPFLPPLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLKVIIVSGIIPFNIIKGIVISIVFILLYRR |
2 | 3p5nA | 0.13 | 0.13 | 0.98 | 1.33 | DEthreader | | LSAIAFVLTF-IK--FPIPFLPPLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLKVIIVSGIIPFNIIKGIVISIVFILLYRR |
3 | 5kbwA | 0.12 | 0.12 | 0.99 | 1.45 | HHpred | | FSALATLVMFLEF--PIFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSGPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPFELYLKFFPFILAFNLVKFGIDSVVTFFV |
4 | 5kbwA | 0.11 | 0.10 | 0.97 | 1.00 | DisCoVER | | FSALATLVMF-L--EFPIFPASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNAIVPPFELYLKFFPFILAFNLVKFGIDSVVTF-- |
5 | 5kbwA | 0.12 | 0.12 | 0.99 | 0.50 | MRFsearch | | FSALATLVMFLEFP--IFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPFELYLKFFPFILAFNLVKFGIDSVVTFFV |
6 | 5kbwA | 0.12 | 0.12 | 0.99 | 2.18 | SPARKS-K | | FSALATLVMFLE--FPIFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFYLKFFPFILAFNLVKFGIDSVVTFFV |
7 | 3rlbA | 0.07 | 0.07 | 0.95 | 1.08 | MAPalign | | MAALAFIISLIN------TVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMIHAYISQAFLEYLVAPVSLG-IAGLFRQPLKLAP-VLLGTFVAVLLKYFFHFIAGIIFSAVAYSLAVNGISGILTAIAAFVILIIFVKF |
8 | 5kbwA | 0.12 | 0.12 | 0.99 | 0.95 | CEthreader | | FSALATLVMFLE--FPIFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPFELYLKFFPFILAFNLVKFGIDSVVTFFV |
9 | 3p5nA | 0.18 | 0.18 | 0.99 | 1.52 | FFAS-3D | | LSAIAFVLTFIK--FPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLIVSGIIPFNIIKGIVISIVFILLYRRL |
10 | 4rfsS | 0.11 | 0.10 | 0.97 | 1.17 | DEthreader | | LMAIVLLQNLVPFGYIP-FGP-F-SMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFV-RAFFTNPLISILPRLLMGLVAGSLYLWHRWMQAMQVAAGCAALTNTVLVLGLVFLFYGVMISLFTNGIPELILDVLVAPLIAMPLRR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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