>PF07395 (263 residues) HPLVVEQLADLAQIPVRYLGWHQAGELKAAIPAWGRHLALSKDVLKRTGKKALFDLGNAE IILPAASDAAAPLRHTMRYLSELNQGRFSGLKAQKEQLAMARAPEDLSKKFRYNQRRELR LLEEAGGVVRPISDFSAQEIASMYCDLFLRRWGFPATGAERMADVLERLRELLIGSVLLL DGKPIAIQLVYRVEAPEWISVEYINGGVDPETKAFSPGSVLSFLNTQAAWEDARSRNKPL RFSFGRADREYKDRWCNPVPVYQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | HPLVVEQLADLAQIPVRYLGWHQAGELKAAIPAWGRHLALSKDVLKRTGKKALFDLGNAEIILPAASDAAAPLRHTMRYLSELNQGRFSGLKAQKEQLAMARAPEDLSKKFRYNQRRELRLLEEAGGVVRPISDFSAQEIASMYCDLFLRRWGFPATGAERMADVLERLRELLIGSVLLLDGKPIAIQLVYRVEAPEWISVEYINGGVDPETKAFSPGSVLSFLNTQAAWEDARSRNKPLRFSFGRADREYKDRWCNPVPVYQ | |||||||||||||||||||
1 | 1xf8A | 0.10 | 0.09 | 0.88 | 1.17 | DEthreader | QDLGWAKVKN--NWEPVDVYLEDDGAIIAAMSMLLG--D-TPT------------FAYASKGPVMDVTDVLLDRLDAVLAYVLRGYVT--MHATIPRLNMVLDLKFTLDLYPSKTKSKIKRPFRDGVEVHSG--N-SATELDEFFKTYTTMAEITHRPIEYFQRMQAAFDATMRIFVAEREGKLLSTGIALKY--GRKI-W-FMYAGSMDGNT-YYAPYAVQSEMIQWALDTN-----TDLYDLGGIESYFKHVFVDAPREYI | |||||||||||||
2 | 1xf8A | 0.09 | 0.08 | 0.87 | 1.17 | DEthreader | EDLGWAKVKN--NWEPVDVYLEDDGAIIAAMSMLLGDTP---------------KKFAYASKGPVMDVTDVLLDVAVVLRGYVT-----MHATIQPRLNMVLDLKFTLDLYPSKTKSKIKRPFRDGVEVH-SGN--SATELDEFFKTYTTMAEITHRPIEYFQRMQAAFDATMRIFVAEREGKLLSTGIALKY-GR-KIW-F-MYAGSMDGNT-YYAPYAVQSEMIQWALDTN-----TDLYDLGGIEEYFKHVFVDAPREYI | |||||||||||||
3 | 6snrA | 0.15 | 0.14 | 0.92 | 1.65 | HHpred | LTKWAETKK-LTGWYARRIAVGRDGEVQGVAQLLFKKVPKPYT------LCYIS-RG--FVVDYSNKEANALLDAKAIKIDPDVETNLKLGFKIQPRMTMITPIDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITG-ERDGFLTRDISYFENIYDALHEDAELFLVKPEGIYLSGALLMFAGSKSY----YLYGASSNEFRDFLPNHHMQYTMMKYARE----HGAT-TYDFGGNLWAFKKVWGTYLSIG- | |||||||||||||
4 | 1xf8A | 0.11 | 0.10 | 0.89 | 0.97 | DisCoVER | YGQVDLGWAKVKNWEPVDVYLEDQGAIIAAMSMLL--GDT---------PTDKKFAYASKGPVMDVTDVLLRLVDEAVKALDLR--FDPEVAYSQPRLNMVLDLTTTLDLYPSKTKSKIKRPFRDGVEVHSG----NATELDEFFKTYTTMAERTHRPIEYFQRMQAAFADTMRIFVAEREGKLLSTGIALKYGRKIWFM---YAGSMDGNT--YYAPYAVQSEMIQWAL--D---TNTDLYDLGGISEVFKHVFVDAPREY- | |||||||||||||
5 | 6snrA | 0.15 | 0.13 | 0.88 | 0.98 | MRFsearch | -TKWAETKKLTG-WYARRIAVGRDGEVQGVAQLLFKKV---------------PKLPYTLCYISRGFVNKEALNALLDSAKEIAKAKAYAIKIDQPRMTMITPIDELLNSFERRNRSKVRLALKRGTTVERS----DREGLKTFAELMKITGERLTRDISYFENIYDALHEDAELFLVKLDGIYLSGALLMFAGSKSYYL----YGASSNEFRDFLPNHHMQYTMMKYAREH-----GATTYDFGGGLWAFKKVWGTYLSEK- | |||||||||||||
6 | 1xf8A | 0.10 | 0.10 | 0.92 | 1.33 | SPARKS-K | VERYEEFMRQKNNWEPVDVYLEDQGAIIAAMSMLLGDT--------PTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALTTLQDHGYVTRATIQPRLNMVLDLTKTLDLYPSKTKSKIKRPFRDGVEVHSGNS---ATELDEFFKTYTTMAERHHRPIEYFQRMQAAFADTMRIFVAEREGKLLSTGIALKYGRKIWFMYAGSM-----DGNTYYAPYAVQSEMIQWALDT----NTDL-YDLGGIEYVFKHVFVKDAPREY | |||||||||||||
7 | 6snrA | 0.15 | 0.13 | 0.90 | 1.08 | MAPalign | LTKWAETKKLTG-WYARRIAVGRDGEVQGVAQLLF--------KKVPKLPYTLCYI---SRGFVVDYSNKEALNALLDSAKHKGFKEGLSKDYIQPRMTMITPIDELLNSFERRNRSKVRLALKRGTTVERS----DREGLKTFAELMKITGGFLTRDISYFENIYDALHEDAELFLVKLEGIYLSGALLMFA--GSKSY--YLYGASSNEFRDFLPNHHMQYTMMKYAREH-----GATTYDFGGTDNAFKKVWGTYLSEK- | |||||||||||||
8 | 2hqyA | 0.10 | 0.10 | 0.95 | 0.46 | CEthreader | RRNCDLSFSNLCSWRFLYDTQFAVIDDFLVFKFWAGEQLAYMMPVGNGDLKAVLRKLIEDADKEKHNFCMLGVCSNMRADLEAILPERFIFTEDRAYADYIYLRSDLATKKFQAKRNHINRFRNTYPDYEYT--PITPDRIQECLDLEAEWCKVNNCDTGNERRALIYALHNLTGGILHVNGKIVAFTFGMPINHE---TFGVHVEKADTSID--GAYAMINYEFANRIPEQYI------YINREEDLRKAKLSYQPVTILEK | |||||||||||||
9 | 1xf8A | 0.09 | 0.08 | 0.94 | 0.93 | MUSTER | DLGWAKVKN---NWEPVDVYLEDQGAIIAAMSMLLGDTPTTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHNVADAGMHATIQPRLNMVLDLTKFPDLYPSKTKSKIKRPFRDGVEVHSGNS---ATELDEFFKTYTTMAEITHRPIEYFQRMQAAFDATMRIFVAEREGKLLSTGIALKYGR----KIWFMYAGSMDG-NTYYAPYAVQSEMIQWALDTNTD-----LYDLGGIEYVFKHVFVKDAPREY | |||||||||||||
10 | 6snrA | 0.14 | 0.13 | 0.91 | 2.90 | HHsearch | LTKWAETKK-LTGWYARRIAVGRDGEVQGVAQLLFKKVPKPYT------LCYIS---RGFVVDYSNKEANALLDSAKEIAKPDVALGFKHGDYIQPRMTMITPIDELLNSFERRNRSKVRLALKRGTTVERSD----REGLKTFAELMKITGERDTRDISYFENIYDALHGDAELFLVKPEGIYLSGALLMFAGSKSY----YLYGASSNEFRDFLPNHHMQYTMMKYARE----HGAT-TYDFGGTDNAFKKVWGTYLSEKI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |