Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | DDCDLPPRYDIKYYRISDKLKRKYQVTWDECPRMLIKPKKVCLRESIVPRPRCRRVRKEVSKASPCLTVNPMECKKEKKGAKCPRFTMPCCKPARMPPSCSRARSKSNCVKRNAPYPSFSECQKDALLGLPPTECRCLDAVSLCEAWAHLRR |
1 | 2nbiA1 | 0.16 | 0.14 | 0.88 | 1.02 | MRFsearch | | --CPFECSPDNPMFTPSPDGS------PPNCSPTMLPTPQPSTPTVITSPAPSSYGDSSRPLDCTDPAVNRPDCDVLPQNINCPACCAFECRPDGSPPICSPTMQPSDCGEVI-----IDACFLPKSDSARPPDCTAVG-RPDCNVLP---- |
2 | 2nbiA2 | 0.16 | 0.11 | 0.67 | 1.71 | SPARKS-K | | -----------------QPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFD----DSSRPPDCTDPSVNRPDCDKTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVC--SPTMMPSPLPSPTE--------------------------- |
3 | 2nbiA2 | 0.04 | 0.02 | 0.56 | 0.93 | DisCoVER | | -SQPSECADVLELC-----------PYDTCFL--------PFDD--SSRP---------PDCTDVNRPDCDKLSTAIDFTCTCCPTQC-----RPDNP--------MFSPSPPPVCSP-TM------------MP-----SPLPSPT----- |
4 | 4l5aA | 0.09 | 0.07 | 0.79 | 0.83 | DEthreader | | -------GGS--GFDLFKVGFCVV-LPRHG--HLIPPSEVNACDKTRNTFPFCERTRQIQARKSIN-V-----YDKMKACIHPCVHAE--GSAV---------SFHLDVNLVEVYASIAIVTDFD--VCVDMLQFRKSV-VHVREILLEAVA |
5 | 5jrlA1 | 0.04 | 0.03 | 0.78 | 0.52 | CEthreader | | GQLSTSGLGSDRELIETSAEGRPHSYGRVAFDIGDSRSAGWKRSRDGKRVVIGTRGLDKTGVRELRADASLTRCGFDGMLRSAICVEEGPPRLVRVDLGTDKITDLGPISPRHEEIEPL--------------------------------- |
6 | 5cqrA | 0.05 | 0.05 | 1.00 | 0.55 | EigenThreader | | TSHVKKTTPELEIVLQKVHELQGHSLGTYDKRYEKAIGHLSKCGPEYLYSPSSIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGEEALRLVYK |
7 | 2zsiB | 0.14 | 0.02 | 0.14 | 0.27 | HHpred | | -----VLATETVHYNPAEL------YTWLDSML----------------------------------------------------------------------------------------------------------------------- |
8 | 2odyE | 0.20 | 0.09 | 0.45 | 0.65 | MRFsearch | | ------------------------------------------------------------NGFCRLPA-DEGICKALIPTGKCTMFSYGGCGGNE------------------NNFETIEECQKACGAPERVNDFESADFKTGCEPAA---- |
9 | 4nl6A | 0.13 | 0.12 | 0.88 | 0.39 | FFAS-3D | | ----VPEQEDSVLFRRGTGQSDD-SDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVDKCSAIWSEDGCSIDFKRETCV---VVYTGYGNREEQNLSDLLSPICEVANNIE---------- |
10 | 3gavA | 0.13 | 0.12 | 0.95 | 1.36 | SPARKS-K | | QSCGPPPE--LLNGNVKEKTKEEYEVVEYYCNPLMKGPNKIQCVDGETLPIVEESTCGDIPEWAQLSSPPYYYCSESFTMIGHRSITCIH-GVWTQLPQCVAIDKLKKCKSSNLIIL-----EEHLKNKKEFDHYRCGWIHTVCINGRWDPE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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