>PF07188 (238 residues) MPRMKDIPTKSSPGTDNSEKDEAVIEEDLSLNGQPFFTDNTDGGENEVSWTSSLLSTYVG CQPPAIPVCETVIDLTAPSQSGAPGDEHLPCSLNAETKFHIPDPSWTLSHTPPRGPHISQ QLPTRRSKRRLHRKFEEERLCTKAKQGAGRPVPASVVKVGNITPHYGEELTRGDAVPAAP ITPPYPRVQRPAQPTHVLFSPVFVSLKAEVCDQSHSPTRKQGRYGRVSSKAYTRQLQQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MPRMKDIPTKSSPGTDNSEKDEAVIEEDLSLNGQPFFTDNTDGGENEVSWTSSLLSTYVGCQPPAIPVCETVIDLTAPSQSGAPGDEHLPCSLNAETKFHIPDPSWTLSHTPPRGPHISQQLPTRRSKRRLHRKFEEERLCTKAKQGAGRPVPASVVKVGNITPHYGEELTRGDAVPAAPITPPYPRVQRPAQPTHVLFSPVFVSLKAEVCDQSHSPTRKQGRYGRVSSKAYTRQLQQ | |||||||||||||||||||
1 | 2v5iA | 0.06 | 0.06 | 1.00 | 0.77 | DisCoVER | GLLIDINYNFTDGESINCKAKFIGDGALIFNNQPFMESKTTEGYQIAATLDAGGLMAAYLFRSCDSIIGGKDGIITFENLGLGNYVIGGRVHYGSGSGVQFLRNNGGVIVTSWRAGESGFKTNYNLQFRSVALSPVWDGFDLGQLPNNHLVLVMNSLGVGLGMDGSGGYVVTVQDCAGAGMLAHTYNRVFSNITVIDCNYQIIIIGDCIVNGIRAAGIKPQPLVISAPNSTISGLVG- | |||||||||||||
2 | 1vt4I3 | 0.06 | 0.06 | 1.00 | 0.70 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
3 | 4b4tO | 0.09 | 0.08 | 0.97 | 0.57 | EigenThreader | MFNNHEIDTILSTLRMEADPSLFEQFEKFYEEKLWFQLSESLTKFFDDAKSTPLRYDKINQLSVVKYL----LASLKDSKDFDESLKYLDDLKAKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKK----DSIPLRITNSFYSTNSQYFKFKTSLLYLSTLEPSTSILGDKIYNFALTVGDHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHISLGL | |||||||||||||
4 | 5mspA | 0.17 | 0.13 | 0.73 | 0.30 | HHpred | -----------------------------------------------SGALVNHVLPYSQLFGPNVVGTAEVAKLALTKR-LKPVTYLSTVAVAVG-----VEPS-AFEED----GDIRDVSAVRSINGYGNSKWAGEVLLREAYEHAG--LPVRVFRSDMILAHRKGQLNVPDQFTRLIATGIAPKSFYQRQRAHYDGIPVDFTAEATLGLAFDVFNPHH---DGVGLDEFVDWL-- | |||||||||||||
5 | 2pffB | 0.06 | 0.02 | 0.26 | 0.87 | MRFsearch | -----------------------------------------------------------------QFKATHILDFGP-------------GGASGLGVLTHRGTGVRVIVAGTGGQGSQEQG-------MGMDLYKTSKAAQDVWNRA------------------------------------------------------------------------------------------ | |||||||||||||
6 | 2xd8A | 0.12 | 0.11 | 0.90 | 0.36 | FFAS-3D | QVALGRSNLSTGTGYGGATDKYALYLK--------LFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYT---GRMTSSFHTPGTPILGNADKAPP---VAEKTIVMDDLLISSAFVYRGEISKKIGYALAEKYDRLIFITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNAMDEKGVSSQGRCAVLNPQYYALIQDIRDVQGSALQSGNGVIEIAG--------- | |||||||||||||
7 | 5jcss | 0.11 | 0.11 | 0.95 | 0.97 | SPARKS-K | SSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVL-----LVGETGTGAKMLAKKLTVINVSQQTETGDGGY-----KPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLDKWADFNDSVKKFEAQSLVKTIRAGEVNLATADT-LESISD | |||||||||||||
8 | 5fxdA | 0.12 | 0.03 | 0.24 | 0.32 | CNFpred | ----------------------------------------------------------------------------------------------------------------------------------------FEMVRNRANEY-----NKDYAAQFIIG-----------------------------REMHHVCLFIYDTAIPEAREEILQ-----------MTKVLVREAAE | |||||||||||||
9 | 6rc9A | 0.04 | 0.03 | 0.81 | 0.67 | DEthreader | LKDFGTATPWRPWLA---PEWFDGGQTVADNE---IAPNWFEYVGDTATVPR-LL--Y--D-ELESNLNLVQRED------------------LQ-LFTPYGWARPWQVYSNKLPLSAN-PSLFAASTGAQLFRGLLGSIPVLVNRSGSN---PAYGENGLLNALETYFG-TRAGGSGSNTT---G--FKIPENDSKATL-IT-GLAWTPDGRPWGVADS--LPEHPNALAFQVSVKL | |||||||||||||
10 | 1r70B | 0.19 | 0.18 | 0.97 | 0.44 | MUSTER | PQESESVTARNFPPSQDASGDLYTTSSQLTLPA----TQCPDGKSHYTNPSQDV--TVPCPVPPPPPCCHPRLSLHRPAEDLLLGSENLTCTLTGLRDASGATFTWTPSSGKSAVQGPPERDLSVSSVLPGCAQPWNHG-CT-AAHPELTPLTANITKSGHLLPPPSEELALNELVLARGFSPKDVLVRQELPREKYLTWASRQEPSQGTTTFAVTSIKKGDTFSMVGHEALPLAFTQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |