Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | SHRTEMSDEERKFRYRASAFLAGVAGIAAVAGFSKTIMMAKKSDPQFFERGVQGSIAMQETGASLAMRALGWGTLYAFLGTGTICYGIWKLTGASNMQEFRESIGNIFPRI |
1 | 4hpqC | 0.05 | 0.05 | 0.89 | 1.17 | DEthreader | | WFQ-KLFVLDCIQQQTKFLSELLREIGRNIEEWSQTVVRLVNDMFWQNETMSRDSSHISKLN-EIPTIRKQVENITRQYQTMLAKVQSQLVESRMLATLSK---------- |
2 | 6wgtA | 0.07 | 0.06 | 0.95 | 1.17 | DEthreader | | FVLIGSFVFFIPATIMVITYFLTISLQKEAADLEDNWETLNDNLKVIEKADNAAKQAEQLTTRNAYIQKYLTMQSISNEQKACKVLGIVFFLFV-----SSAVNPLVT-FI |
3 | 2r9rB3 | 0.04 | 0.04 | 0.81 | 0.58 | DisCoVER | | --SKGLQILGQTLKASMRELGLLIFFLIGVILFSSAVYFAEADERDSQFPSIPDAFMVPT-TIGGKIVGSLCAIAGVLTIALPVPVIVSN----FYF-------------- |
4 | 5vjsA | 0.06 | 0.05 | 0.90 | 1.00 | DEthreader | | -GS--PELRQEHQQLAQEFQQLLQEIQQLGRELLKGELQGIKQLEASEKARNPEKSVLKILE-DEEKHIELLETLQQTGQEAQQLLQELQQTQELW-GG-PELRQK----- |
5 | 6k4jA | 0.07 | 0.06 | 0.92 | 0.51 | CEthreader | | --MPVKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNS-------SFYTGVYILIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAI |
6 | 6yslG | 0.08 | 0.08 | 1.00 | 0.53 | EigenThreader | | IILAFVALSVGMVLKGAGTISAVVIAFPTLFRVLFTIEELIPMFSEWAQLARREGLLALGLSMAVVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVIGATLLGIFTGYVLW |
7 | 4o9pC | 0.11 | 0.06 | 0.58 | 0.22 | HHpred | | ------------------GFWSALYIFVLTAFLGY--ELITRVPVILHTPL-SGGHAETGLEKLIGFLGVILGAANAAGGYAVTV-------------------------- |
8 | 3mktA1 | 0.14 | 0.12 | 0.86 | 0.35 | MRFsearch | | ---VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGV-------------SAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILA |
9 | 6bugC2 | 0.17 | 0.14 | 0.86 | 0.61 | FFAS-3D | | ---------NRDELLNML----EQAVKYIMLGFLYKFVLAGSMLLPPLKAQALSQGGIFNLPTLGVMYVYGFDLFFDFAGYSMFALAVSNLMGIKDMKEFHMSLSFWF--- |
10 | 6w2wA2 | 0.11 | 0.10 | 0.89 | 0.69 | SPARKS-K | | ---ENEAAKECLKAVRAALEAALLALLLLAKQLATAALRAVEAACQLAKQYPNS---------DIAKKCIKAASEAAEEASKAAEEAQRSQKARDEIKEASQKAEEVKERC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|