>PF07088 (514 residues) LSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDSDVLYVSTRVDQETVHEMYFADH SSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYE YLAVRHDDPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEYIVDGVVTLQVKEDDRG RTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVELLTIQTGTGNGTWDPLANSKAKF STGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEMGVAVVPPREG SPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRYDQPDSTESFSEMATTTPPDDAP TATHETDGADDGSRSTDGVTGSDQPHPIDEDFESPIEGGQLAYEPYMAYVEQVREESEDP LLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQGTELRTRADRVADMHFRLERSG DAIILYGENPLTPLLGIGISQSESIPKITLTEMV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDSDVLYVSTRVDQETVHEMYFADHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVELLTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEMGVAVVPPREGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRYDQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDGVTGSDQPHPIDEDFESPIEGGQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQGTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV | |||||||||||||||||||
1 | 3dvlA | 0.17 | 0.14 | 0.81 | 5.37 | HHpred | --ISHGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIFDEPGVFVTFEETPQDIIKNFGWDLAKLVDEGILDASPDPEGQ-----EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASS----VVRRELFRLVARLKQIGATTVMTTERIEYGVEEFVSDNVVILRNVLEG-ERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT----------Q-RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGT---GKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES--------------------------------------------------------------AGLE-D---HLQIIKSEIND-FKPARIAIDSLSALARGVRQFVIGVTGYAKQ-EEITGLFTNTSDITDSHIITDTIILLQYVEIRGEMSMRGSWHDKAIREFMISD-KG---PDIKDSF | |||||||||||||
2 | 3dvlA | 0.15 | 0.13 | 0.82 | 1.38 | SPARKS-K | DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEEPGVFVTFEETPQDIIKNARWDLAKLVDEGKLFILDASPDPEGQEV--VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDAS----SVVRRELFRLVARLKQIGATTVMTTEIARYGVEEFVSDNVVILRNVLEGERRR-RTLEILKLRGTSHMKGEYPFTITDHGINIFPL-----------GAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGT---GKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG------------------------------------------------------------------LEDHLQIIKSEINDFK-PARIAIDSLSALNNAFRQFVIGVTGYAKQEEITGLFTNTGAHSITDSHIITTIILLQYVEIRGSRAINVFKMRGSWH------DKAIREFMISDKG | |||||||||||||
3 | 3dvlA | 0.17 | 0.14 | 0.81 | 1.47 | MAPalign | SHGGL--PIGRSTLVSGTSGTGKTLFSIQFLYNGIFDEPGVFVTFEETPQDIIKNAWDLAKLVGKLFILDAS-----PDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV---FQQYD-ASSVVRRELFRLVARLKQIGATTVMTTERARYGVEEFVSDNVVILRNVLE-GERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPL-----------GAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGT---GKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERLLKIVCAYP---------------------------------------------------------------------ESAGLEDHLQIIKSEINDFKPARIAIDSLSALNNAFRQFVIGVTGYAKQEEITGLFTNTSAHSITDSHI-ITDTIILLQYVEISRAINVFKMRKAIREFMISD----KGPDIKDSF | |||||||||||||
4 | 3dvlA | 0.17 | 0.14 | 0.81 | 1.58 | HHsearch | GFDSHGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIFDEPGVFVTFEETPQDIIKNFGWDLAKLVDEGILDASPDPEG-----QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSV---VRREL-FRLVARLKQIGATTVMTTERIEEGVEEFVSDNVVILRNVLEG-ERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT-----Q------RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGT---GKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLL-KIV---CA--YP--------------------------------------------------------ESAGLED-HLQIIKSEIN---D-FKPARIAIDSLSALANAFRQFVIGVTGYAKQEEITGLFTNTDQFSITDSHIIT-DILLQYVEIRGEMSINVFKMRGSIREFMIS-DKG---PDIKDSF | |||||||||||||
5 | 3dvlA | 0.17 | 0.14 | 0.81 | 1.87 | FFAS-3D | --------IGRSTLVSGTSGTGKTLFSIQFLYNIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFIDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ----QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEGVEEFVSDNVVILRNVLEGERR-RRTLEILKLRGTSHMKGEYPFTITDHGINIFPL-----------GAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILAT---GATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYP-------------------------------------------------------------------ESAGLEDHLQIIKSEINDFKPARIAIDSLSALNNAFRQFVIGVTGYAKQEEITGLFTNTMGAHSITDSHIITDTIILLQEIRGEMSMRGSWHDKAIREFMIS-DKG---PDIKDSF | |||||||||||||
6 | 4ydsA | 0.13 | 0.05 | 0.40 | 1.32 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIISTGNDDLDRRLG-GIPYPASIMIEGDHGT---GKSVLSAQFVLGFLLSDKKGYVITTEQTTKDYLIKMKEIKIDLIPYFGKLRIAPLNTKK-------F---------------------------------------------------------NWNSSLAEKILDVIVNFIRSKNIDFIVIDSLSILAAFSEKQLLQFMKDLVNTGKMILFTIHPDEEMKSKITSIVDVYLKLSAATIGLERTGGISGSDTISFDVDPALGI---KVVPL- | |||||||||||||
7 | 3cmuA | 0.14 | 0.11 | 0.79 | 1.45 | MAPalign | GAGGL--PMGRIVEIYGPESSGKTTLTLQVIAAAQRGKTCAFIDAELDPIYARK-LGV---DIDNLLCSQP-----------------DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGSHMGLAARMMRKLAGNLKQSNTLLIFINQITGGNALKFYASVRLDIRRIAVNVVGSETRVKVVKNKIAAP-FKQAEFQILYGGINGELAAALGQIEKQFGKGSIMRLSMDVETISTGSLSLDIALAGGLPMGRIVEIYGPESS---GKTTLTLQVIAAAQREGKTCAFIDAEHALPIYARKL---GV----DIDNLLCSQPDT-------------------------------------------------------------------------GEQALEICDALARSGAVDVIVVDSVAALARMMSQAMRKLAGNLKQSNTLLIFINQIRTTGGNALKFYASVRLDIRRIGSETRVKVVKNKFKQAEFQIEKAGAWYSYKGEKIG | |||||||||||||
8 | 2ztsC | 0.21 | 0.08 | 0.39 | 1.12 | HHsearch | FDELIGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEGEPGVFVTLEERARDLRREFGWDFEKYEKEGIVDGVSSVV--------GLPSFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER----KIREVLLKLNTILLE-GVTTILTTEAPGKGIEEFIARGVIVLDLQEKN-IELKRYVLIRK-RETRHSK-KYPFEIGPNGIVVYP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 3dvlA1 | 0.22 | 0.09 | 0.39 | 1.35 | FFAS-3D | --------IGRSTLVSGTSGTGKTLFSIQFLYNIEFDEPGVFVTFEETPQDIIKNARDLAKLVDEGKLFIL---DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF----QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEGVEEFVSDNVVILRNVLEGERR-RRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 2dr3D | 0.21 | 0.09 | 0.40 | 1.83 | HHpred | -----GIPERNVVLLSGGPGTGKTIFSQQFLWGLKMGEPGIYVALEEHPVQVRQNMAQPYEEKGMFAMVDAFTAGIGKSKEYEIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK------PAMARSIILQLKRVLAGTGCTSIFVSQVSVGERVEHGVDGIIRLDLDE-IDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYPDKVLKR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |