>PF07042 (282 residues) KKRTAGGELAEKVSEAKQTALLKHTKQQIKDMQLSLFDLAPWTGSHAALPNDFGRSAIFT VRNKKVPRPALQGQSIYHVNKDVEITYTGIELRADDDELVFAQVLEYANGTALGEPVSFT FYELCQDLDWSINGRYYTRAEECLTRLQASAMQFSSQRIGRLESVSLIRRFRVLDRGKRT SRCQVEIDAEIVVLFAGDHYTKFVWEKYRKLSPNRDGRMFDYFATHKEPYPLKLETFRLM CGSDSTRPKKWREQVGEACDELRENGLVESAWVNDDLVHCKR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KKRTAGGELAEKVSEAKQTALLKHTKQQIKDMQLSLFDLAPWTGSHAALPNDFGRSAIFTVRNKKVPRPALQGQSIYHVNKDVEITYTGIELRADDDELVFAQVLEYANGTALGEPVSFTFYELCQDLDWSINGRYYTRAEECLTRLQASAMQFSSQRIGRLESVSLIRRFRVLDRGKRTSRCQVEIDAEIVVLFAGDHYTKFVWEKYRKLSPNRDGRMFDYFATHKEPYPLKLETFRLMCGSDSTRPKKWREQVGEACDELRENGLVESAWVNDDLVHCKR | |||||||||||||||||||
1 | 2nraC | 0.09 | 0.07 | 0.73 | 1.00 | DEthreader | -----------------------------------------VNKKTKIRHRNELNHTLAQ-------------------------------LP-LPAKRVMYMALALIDSEPLRGRVFKIRAEDLALAKITP-SLAYRQLKEGGKLLGASKISLGDIIALAELDLNIIEWIAY-SPD--EGYLSLKFTRTIEPYISSIKFTTQLLTASLRLSSQYSSSLYQLIRKHYSYFIISVDELKEELIAYKYPDFIFKRVLNKAIAEIKKTEISFVGFTVISKLKFEV | |||||||||||||
2 | 2nraC | 0.10 | 0.07 | 0.69 | 0.83 | DEthreader | -----------------------------------------VNKKTKIRHRNELNHTLAQ-------------------------------LP-LPAKRVMYMALALIDSEPLERRVFKIRAEDLALAKITPS-LAYRQLKEGGKLLGASKI-----------DLNII-EWIAY-SPDEGYLSLKFTREPYISSLIGKKFTTQLLTASLRLSSQYSSSLYQLIRKHYSYFIISVDELKEELIAKYPDFPIFKRVLNKAIAEIKKTEISFVGFTVISLKFEFV | |||||||||||||
3 | 5ubfA | 0.09 | 0.07 | 0.76 | 1.14 | HHpred | --------------------------------------------------------QALAPPRTR--KSYQKS--V-SISGRAVIETRSKNITV-DDL-TLFALFTLTVQYHD-NKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELTGGKSDRFRFLARTITASSDGKPNLYILVWEPSFFEELTRDYFFLFPPEI-LKQHTLV-FQLYSYFRSRSRRHTDVLSELNQKLAR-NIEWRRFS-DLIRELRRLSEWGYHLTVKSIEEQVDIKC | |||||||||||||
4 | 2nraC | 0.09 | 0.07 | 0.72 | 1.28 | DisCoVER | --------------------------------------V--NKKTKIRHRNELNHTLAQL---------------------------------PLPAKRVMYMALALISKEPLRGVFKIRAEDLAALAKITPS-LAYRQLKEGGKLLGASKISLRGDDNSEELDLNIIEWIAYS---PDEGYLSLKFTRTIEPYISSNKFTTQLLTASLRLSSQYSSSLYQLIRKHYKKNYFIIVELKEELIAYYPDFPIFKRDVNKAIAEIKKKTEISFVGFSKLKFEFV- | |||||||||||||
5 | 2z9oA | 0.11 | 0.07 | 0.64 | 1.20 | MRFsearch | ----------------------------------------------------------------------------------------------RDQKRMLYLFVDQIR----DGICEIHVAKYAEIFGL-TSAEASKDIRQALKSFAGKEVVFYRPEEKGYESFPWFIKRAHSP---SRGLYSVHINPYLIPFFIGNRFTQFRLSETKEITNPYAMRLYESLCQYRGIVSLKIDWIIERYQLSYQRMPDFRRRLQVCVNEINSRPMRLSYIEKKQTTHIVF | |||||||||||||
6 | 2nraC | 0.12 | 0.08 | 0.70 | 1.22 | SPARKS-K | ------------------------------------------------------------------------------VNKKTKIRHRNEQLP-LPAKRVMYMALALIDPLERGRVFKIRAEDLAALAKITP-SLAYRQLKEGGKLLGASKISL---RGDDIIALNIIEWIAYSPDE---GYLSLKFTRTIEPYISKNKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKKTEISFVGFTVSKLKFEF | |||||||||||||
7 | 2nraC | 0.11 | 0.08 | 0.73 | 1.45 | MAPalign | ----------------------------------------VNKKTKIRHRNELN-----------------------------HTLAQL--P--LPAKRVMYMALALISKEPLRRVFKIRAEDLAALAKITP-SLAYRQLKEGGKLLGASKISLRGDDIIALADLNIIEWIAYS---PDEGYLSLKFTRTIEPYISKNKFTTQLLTASLRLSSQYSSSLYQLIRKHKNYFIISVDELKEELIAKYPDFPIFKRVLNKAIAEIKKKTIVGFTVHKISKLKFEF | |||||||||||||
8 | 5ubfA | 0.09 | 0.07 | 0.79 | 1.26 | CEthreader | -------------------------------------------------------AGIIDQALAPPRTRKSYQKSVSISGTRAVIETRSSKNITVDDL-TLFALFTLTV-QYHDNKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHEPEGFKSDRFRFLARTITASEEAKPNLYILVWEPSFFEELLTRDYFFLFPPEILKQ-HTLVFQLYSYFRSRSRRHTDVLSELNQKLARN-IEWRRFSDLIRELRRLSEGKGSEDLFVVNLWGYHLTV | |||||||||||||
9 | 2z9oA | 0.10 | 0.07 | 0.68 | 0.76 | MUSTER | ---------------------------------------------------------------------------------SNDLTEAAYSLSR-DQKRMLYLFVDQIR----DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEDGYESFPWFIKRAHSPSRG---LYSVHINPYLIPFFIGNRFTQFRLSETKEITNPYAMRLYESLCQYRKIVSLKIDWIIERYQLPQRMPDFRRRFLQVCVNEINSRTPMRSYIEKKKVFSFRD | |||||||||||||
10 | 2nraC | 0.12 | 0.09 | 0.72 | 3.09 | HHsearch | ---------------------------------------------------------------------VNKKTKIRHRNELNH---TLAQLPL-PAKRVMYMALALIDSKERGRVFKIRAEDLAALAKIT-PSLAYRQLKEGGKLLGASKISLRGDDINEELDLNIIEWIAYS---PDEGYLSLKFTRTIEPYISSNKFTTQLLTASLRLSQYS-SSLYQLIRKHYSYFIISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKKTEISGFTVEKGKIEFVV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |