Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | IPVVYSKYMSVAVLAALDSVFGGLRASMEDNFDNAIFLTGFFSNTLLAAFLAYIGDQLGVELYLAAVLVFGVRLFQNLAIIRRHLL |
1 | 3b8cA2 | 0.04 | 0.03 | 0.98 | 1.17 | DEthreader | | VGHFQKVLTAIGNFCICSIAIGMVIEIIVMYYGIDNLLVLLIGGIPIAMP-VLQRMKNPTPDSWKLKE-IFATGVVLGGYQAIMTV |
2 | 3wvoA | 0.05 | 0.05 | 1.00 | 1.33 | DEthreader | | GRTAIKAVEDAEKAVTVLGGLAADLAKAAGADPETPRAAARDRGFGMLDGPFRTWLATLRAWQQKAHRIISDLGRQLVAEAGEAAW |
3 | 5wudA | 0.09 | 0.07 | 0.76 | 0.78 | DisCoVER | | ----SIVFDIFNYIGIVAFAISGAIKAVKKGMDLLGVLVLGFSTAAIGLGAFASSGVYF-ALIVSFLITL---------------- |
4 | 4whjA2 | 0.06 | 0.06 | 0.93 | 1.00 | DEthreader | | -PALSMLQKAMEIIQQAFINVAKKHFG---EFF-NLNQTVQSTIEDIKVKHTAKAENMLIIIQYFMLRENG-DSLQKAMMQILQEK |
5 | 6iu3A2 | 0.10 | 0.10 | 1.00 | 0.54 | CEthreader | | NASSSIVLTAGIAEVAAGAISMGLGGYLDPKRALQSAFTIAIAYVLGGLVPLIPYMFIPVAAVVASVILTLMALLIFGYAKGYFTD |
6 | 2ewgA1 | 0.10 | 0.09 | 0.94 | 0.55 | EigenThreader | | -----MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLRGLTVIDVLHDACVCGWMIEFDDIMDNVQCAINDGLL |
7 | 5wudA2 | 0.16 | 0.14 | 0.87 | 0.26 | HHpred | | -----NNVILVVIVGAITAVGGGIRDILSNE-VPLILTREYATTAVIGSFVYFIASDLSVPEIVSFLITLILRIL----AMELKW- |
8 | 3aqpA | 0.14 | 0.14 | 0.98 | 0.32 | MRFsearch | | --EELRRNAVMAVLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRE |
9 | 3lynB | 0.16 | 0.15 | 0.97 | 0.62 | FFAS-3D | | INKAYEVTMKIQIISGFDRQLTAWLRVHGRRLTNNQKKTLFFVNRRYMQYMLWVKRKIAVGDYTRLGAEIGRRMVFFYNFLSG--- |
10 | 1gakA | 0.12 | 0.10 | 0.90 | 0.65 | SPARKS-K | | VSRQEQSYVQRGMVNFLDEEMHKLVKRFRDMWNLG---------PGFVFLLKKVNRERMMRYCMDYARYSKKILQLTLTKMGRFVG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|