>PF06899 (446 residues) MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI IKWFDWLYEQGNRETNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL MIAKLLYWLFESAGLIHKRTKSSLRT |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYEQGNRETNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRT | |||||||||||||||||||
1 | 5t77A | 0.10 | 0.09 | 0.86 | 1.37 | FFAS-3D | --FSRILGLFAIMFPFFLRKVFAFVPLYSEKSGEVINGFSLIILALVILSYFFPELIINLFGAGSSHETKILAKKLLLITSPSIYFIFLWAISYSILNTNNKFFWPALTPSISNITIIIGTFLSISPTIGFLIGSILMFFSIIKSIIKHKYYFTIKHFPHFLKLFFPTFMTMVVSQINTVVDMNVVSYLQYASRFYLLPY-----GLFAVSVSTVVLSKISNDRKFFTIPSMVGLIFLSTPIIRFFYEHGAFTSKDTLITSKILIAYTYGIYSTISRSYHAIKNTKTPFIAATIVSLS-------------------------------------NIILDIIFKYGPIGVALAT-SIAGIIGVLYLLFSVKTFPIKDFLKISLNSLIMLFVIYLTDFTDNEFWFLIQILIGILVYLIFSSIFYRDLIRRF---------------- | |||||||||||||
2 | 6w4sF | 0.07 | 0.06 | 0.86 | 1.13 | SPARKS-K | FLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNA--------RLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW---IVVVAGED---------RSKLANMNATIRRIDQLTNILAPMAVGQIMTPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALARTFRDGWVSYYFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSAITGIMGTVAFTWLRRCGLVRTGLISGLAQLSCLILCVMPI-------------------------------ISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTL------------ | |||||||||||||
3 | 3rkoB | 0.09 | 0.08 | 0.86 | 1.81 | CNFpred | LVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADN------------LLLMYLGWEGVGLCSYLLIGFYY-----------TDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGMLMWATLMLLGGAVGKSAQL---PLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-----DIKRVLAYSTMSQ---IGYMFLALGVQAWDAAIHLMTHAFFKALLFLASGSVILAC--------EQNIFKMGGLRKS--IPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAH-GVTHSLPLIVLLILSTFVG------------------- | |||||||||||||
4 | 6f2gA | 0.06 | 0.04 | 0.68 | 0.84 | DisCoVER | -------------------------------GIALTVVVGTVIGIFFKPTAVYGAAGAPGLGLLAW---FV--A--G----------------------IITIAGGLTVAE--IGT-----------IYPQTGGMMIYLEKVYGRW-LGFLVGWAQM--VIYYPANIALAIIFATQFLFLSDSTIVPTAILTSIFLMGVNF-L-GTKYSGWIQTLATI-LK--LIP--------------LVVIIVAGL-------LYP-GG-GRLVPSFSALIATLFAYDPGKMLPKVIIGGLSIVMAV-----------YLLTNIAYLF--VL---DSSQLATDTPA-ALVASHLF-----------------EGIGSKLVTIGILISVF-GGINGYI-ILRVPYATNL--PINGGLVMLGIAIVMILTQFLTFIAVIIRVPIPLIAIGGLYI- | |||||||||||||
5 | 4a01A | 0.10 | 0.07 | 0.63 | 0.67 | DEthreader | VKCAEIQNAISEGATSFLFTEYKYVGIFMAFILGSSALFGRVGGGIYTKAADVGADLVGKVERNIDRNPAVIADNVGDNVGDIAGMGSDLFGS-A-------LVVASIGMLYPLIVSS-GI--CL--T---AT-----------IKAVK-E--IEPALKKQLVI-------V--SLIQLFLCVAVLWAGLIIGFVTEYYTSVGALGYKSVIIPIFAIAIIFVFAMYGIAVAAL------------------------------------------------------------------A-SIGLIVGAML-PYWFS--------------AMTMKSVGSAALKISTDASIKEMIPPGALVMLTPL-VG--------LSG-LAGSLVSGVQIAISASNTGAWDNDGDLKD-GP--------------------------------- | |||||||||||||
6 | 6tbuA | 0.08 | 0.08 | 0.97 | 0.52 | CEthreader | FNELLLTDVWLVSLGGTFVMASVWLYTGSAFITLMSCVAICFSLGLAYFFYAIVLEFE-------FFPYMNLLAVVVIIGIGADDVFLFLKIWHCVLTESLENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITVTNYLLMITWLPASVSIMERLFKKSINRFCQMFEECITKSIMNYAYLWLLIFGALGASSAVIVFWYPGLQLPEKSHFQLFVSKHPFEVYSSLKQQFWFEKPYNFKMHMHFVWGVQAVDELPNCFIENLIDYMKRRCIPCCDAQFPFEPHIFEYCLPQSISNMYDTTFFRPGVAGPKFAEAFTPLLVKALVIEFGWFTSDLKFYNVQDTLSHDTFVAICLAMAASLAVLLCFTVNI-----LISIYAVLTVSLSIFNTVAVLILLGWQLNILESIAVSTAIGLAVDFSLHYGIHYRMSPVKERLAATQFVL | |||||||||||||
7 | 4uxvA | 0.06 | 0.06 | 0.88 | 0.63 | EigenThreader | KIYAEIDRLESWKIEILNRSIVEE-------MGQTEEFFEKWREEWDEIVTAHMPKVEELLYDAEENAHIDDLLTAAESSIEKILREISLVTSEEKSLAYSHDLDEIWYITARKVLLEQDRNLERLQSYIDDVPKLLADCKQTVPGQIAKLKDGYGEMLENLSNQLKRAEHVLMTELDIDEASAILQLIDENIQSAGQSVLESYLDEIGKLLSSVKDKLDAEHVAYSLLVEEVASIEKQIEEVKKEHAEYRENLQALRKEELQARETLSNLKKTISETARLLKPGIPSHIQEMLE---NAHHH---IQETVNQLNELPLNMEEAGAHLKQAEDIVNRASRESEELVEQVILIEKIIQFG----------NRFRSQN----------HILSEQLKEAERRFYAFDYDDSYEIAAAAPGAVEKIKAD--------------------- | |||||||||||||
8 | 6barA | 0.10 | 0.06 | 0.65 | 0.26 | HHpred | ---------------------------PNWLAYDWGLVFLVA-AIVALGFVNLGS--AAP------DPVLLYRQSVALGLGLLLAFLLQF----LS-R----------RRLF-GLAYPLY-GASLLLLA-LVLVVGREINGARAWFV-L-GPLQ-FQPLELAKLGLLLALAKALEGRPIARVWDYAPALLTLPVVGLLLLQPDLGGALVVLFGVFVVVFVRG-LPWRHLLVGLF--A-L----------------------------------------------------------------A----LLVI--GSGGLF-----GK-RHTDFVFSVWA---EEWGFVGVVGLLGLYGLLLARLFALALACP---RLSDRLFLSGFAGMLGFQVV-VNLGVALGLFSY---GGSSLIATLAGLGLVLLVHRDRYQ----------- | |||||||||||||
9 | 3gi9C | 0.11 | 0.10 | 0.85 | 0.40 | MRFsearch | -SLWEAVSMAVGVMIGASIFSIFGVGAKIA--GRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKANIITGALSILLWMSYVI-------------------------SIALFAKGFAGYFLPLIAP-----------------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGAVSGMIFASAIFFLSYMGFGVITPRAIFISILIVMFVYVGVAISAIGNKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNIYGGANVAYSLAKELPEFFERFKSTEGL------------------YITSALGVLFALLGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQW----ITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKSL-- | |||||||||||||
10 | 6ftg51 | 0.11 | 0.09 | 0.85 | 1.35 | FFAS-3D | -TLLKLLILSMAAVLSFSTRLFAVLRFESVHEFDPYFNYRTTRFLAGLMITSAAIYHVLHFFHDIRNVCVFLAPLFSSFTTIVTYHLTKELK-------------------DAGAGLLAAAMIAVVPGYISRSVAGSY----------------DNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSS----WGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGV---FGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLSEHQPTTWSSYYFDLQLLV---------------FMFPVGLYYCFIFIIMYGVTSMYF-------SAVMVRLMLVLAPVMCILSGIGVSQVLSTYMVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGG---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |