>PF06888 (232 residues) IVVVFDFDKTIVDVDSDNWVIDELGFTDLFNQLLPTMPWNSLMDRMMMELHSHGKTIEEI EEVLCRIPLHSRVIPAIKAAHALGCDLRIVSDANMFFIETILKHLGIREYFSEINTNPGY VNEEGRLRILPYHDFNKVSHGCSLCPPNMCKGSIIDRIQDSISQDDKKRFIYLGDGSGDY CPSLRLKEKDFMMPRKNFPVWDLICKDPLLVKAEIHGWSDGEELEQILLHLI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | IVVVFDFDKTIVDVDSDNWVIDELGFTDLFNQLLPTMPWNSLMDRMMMELHSHGKTIEEIEEVLCRIPLHSRVIPAIKAAHALGCDLRIVSDANMFFIETILKHLGIREYFSEINTNPGYVNEEGRLRILPYHDFNKVSHGCSLCPPNMCKGSIIDRIQDSISQDDKKRFIYLGDGSGDYCPSLRLKEKDFMMPRKNFPVWDLICKDPLLVKAEIHGWSDGEELEQILLHLI | |||||||||||||||||||
1 | 3p96A3 | 0.14 | 0.12 | 0.87 | 1.33 | DEthreader | RLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAALFAQSLQQRVATLA--GLPATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAE--EL-M-LDYVAANELEIVDGTLTRVVGPII------------DRAGKATALREFAQRAG-VPMAQTVAVGDGANDIDMLA-A-AGLGIAFN--AK--PALRE----V-ADASLSHYLDTVLFLLGVT- | |||||||||||||
2 | 1rkvA | 0.16 | 0.14 | 0.85 | 2.33 | HHpred | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP----TLLCHKLEIDDSDRVV--GYQL---------RQK--DPKRQSVIAFKSL-----YYRVIAAGDSYNDT-TMLSEAHAGILFH-A---PENVIREFPQ---FPAV--HTYEDLKREFLKAS | |||||||||||||
3 | 1l7nB | 0.16 | 0.14 | 0.85 | 0.61 | DisCoVER | KLILFDFDSTLVNNETIDEIAREAGVEEEVKKITEAEGFEQSLRKRVSLLK-D-LPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEK--L--GLDYAFANRLIVKGKLTGDVEGEV-----------LKE-NAKGEILEKIAKIEGI-NLEDTVAVGDGANDI-SF-KK-AGLKIAFCAKPIL---KE-----KADICIEKRDLREILKY----- | |||||||||||||
4 | 1qh9A | 0.14 | 0.12 | 0.84 | 0.33 | MRFsearch | -GIAFDLYGTLFDVHSVVGRCDEAEYTWLRSLMNRYVNFQQATEDALRFTCRHARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQ-------------------------VYKPDNRVYELAEQALG-LDRSAILFVSSNAWDATGARYFGFPTCWINRT-GNVFEEMGQT------PDWEVTSLRAVVELF---- | |||||||||||||
5 | 1rkvA | 0.14 | 0.12 | 0.85 | 1.37 | SPARKS-K | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPT----LLCHKLEIDDSDRVVGYQLR-------------QKDPKRQSVIAFKSL-----YYRVIAAGDSYNDTTMLSEAH-AGILFHAP-----ENVIREFP----QFPAVHTYEDLKREFLKAS | |||||||||||||
6 | 4ezeA | 0.15 | 0.13 | 0.87 | 0.61 | MAPalign | GIIAFDMDSTFIAEEGVDEIARELGMSTQITAITGKLDFNASFTRRIGMLK--GTPKAVLNAVCDRMTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKAR--Y--QLDYAFSNTVEIR-DNVLTDNIT----------LPIMNAANKKQTLVDLAARLNI-ATENIIACGDGANDLPMLE-H-AGTGIAWK----AKPVVRE-------KIHQINGFELLLFLIEDEL | |||||||||||||
7 | 4ex6A | 0.14 | 0.12 | 0.86 | 0.48 | CEthreader | RGVILDLDGTLADTTITAEVLAAMGTARGAILSTVGRPLPASLAGLLGVPVEDPRVAEATEEYGRRFLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDD-------------------------SVERGKPHPDMALHVARGLGI-PPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMRA------GADTVVDSFPAAVTAVLDG- | |||||||||||||
8 | 1rkvA | 0.15 | 0.13 | 0.85 | 1.11 | MUSTER | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPT----LLCHKLEIDDSDRVVGYQL-------------RQKDPKRQSVIAFKSL------YRVIAAGDSYNDTTMLSEAH-AGILFHAP----ENVIREFPQ-----FPAVHTYEDLKREFLKAS | |||||||||||||
9 | 4ex6A | 0.13 | 0.11 | 0.85 | 0.98 | HHsearch | RGVILDLDGTLADTPAAAEVLAAMGTAVSRGAITVGRPLPASLAGLLGVVE--DPRVAEATERFGPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDS----VERGK----------PHP-----------DMALHVARGLGI-PPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDE-LMR-----AGADTVVDSFPAAVTAVLDG- | |||||||||||||
10 | 2feaA | 0.17 | 0.15 | 0.88 | 1.54 | FFAS-3D | -FIICDFDGTITNDNIINIKTFAPPEWALKDGVLSKTL--SIKEGVGRFGLLPSSLKEEITSVLEDAKIREGFREFVAFINEHEIPFYVISGGDFFVYPLLEGIVEKDR----IYCNHASFDNDYIHIDWPHSCKGTCSNQC-----GCCKPSVIHEL------SEPNQYIIIGDSVTDVEAA---KLSDLCFARDY--LLNECREQNLN----HLPYQDFYEIRKEIENVK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |