Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | FRPVKSICAHLNAFHAYADDPKRFVEANHYCAHLNEDVRQCLLYDSDEPTARLIGIEYMITPKLYDTLPQEERKLWHSHAYEVKSGMLIMPNRAVPEPAWEVAENMEMDQVVHLYGKVYHLWQTDRGDMLPLGPPKLMTSFTADGQFDFKHVRDRDRRFGVDYKQKKEARKDI |
1 | 2wqlA | 0.05 | 0.03 | 0.53 | 0.75 | DisCoVER | | ------------AQSHSLEIVSAIFGAGTVRIITLITTMTVRTDAVNKEALSYDSTVIDGD--I-----------------LLGFIES----------------------------IETHMVVVPTAD--GSITKTTAIFHTKGAVVEAYLI--------------------- |
2 | 5injA | 0.04 | 0.03 | 0.77 | 0.83 | DEthreader | | GVESLGTSPVEFSLAF---LPRAPHLRVLVEGNGPEGLALWCALELRSGGVPGVKVYLNPAADRAAEVRFDALPR-AD----------------------------------GFPFLALDLGDWDAPRVKIHSFTSGYTLHVVRAVLMSAALDRALAAVSRPLSGVIPR-TVP |
3 | 2lf2A | 0.06 | 0.05 | 0.82 | 0.46 | CEthreader | | AAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEEHWSICEYAIIKPIERF-------TGKDGFTDASGKLNTE--------------------MPRSNWDMRFIDKGEITEV-----QYHISYDDVAQLEATIQMGFKEGITMAMENLDELLVSG |
4 | 4yf9C2 | 0.03 | 0.03 | 0.91 | 0.60 | EigenThreader | | SGVLFGNPHWYNVSGVSGLPVIQIGFNAWSHTVSTASIVNTVAVGR----GSAKAWYADIGAQTAACTTPFGMAVGQALPNVDGSRSECDWLTDADSVQK------------GAMPSLQRDDRLAGTDGYAGNKATFLTFSLSSPHHGDYTKAYSAGQWPFTEAEITGNADYR |
5 | 4nhbA | 0.10 | 0.06 | 0.61 | 0.32 | HHpred | | ------------------------------------EITPEIS-LS---GHILVIHSLYINDKFFKSLPEQDQKWIEEAAKRSADDV---------WAMVADGDEKAKATILA-NKGNIHEPSKE-----------LHEHLVNAKRSWKLFYDT----VPNAQAILDSADS-- |
6 | 6kz8A | 0.18 | 0.15 | 0.83 | 0.53 | MRFsearch | | ----------VGRTRKIKNNPKWYESFHIYCAHL-ASDIIFTVKDDNPIGATLIGRAYIPVDQVLQYFHVEEDRNWNMGFFSQRQGCKVSLYQYEPQRCWEDI----FDAISNAHLIYITGWSVY-------AEIALVRDPKPGGDVTIGELLKKKASEGVRVLL-------- |
7 | 3h20A1 | 0.10 | 0.10 | 0.94 | 0.40 | FFAS-3D | | ---LKAMGCERFDIGVRDATTGQMMNREWWLKRMNAQGNDVYIRPAEQERHGLVLVDDLSEFDL-----DDMKAEGREPALVVETSPKNYQAWVVADAAGGELRGQIARTLASEYDADPASADSRHYGRLA-GWVLLRESKGKTATAGPALVQQAGQQIEQAQRQQEKARR-- |
8 | 5x6xC1 | 0.13 | 0.13 | 0.97 | 0.65 | SPARKS-K | | SLPNPGGKGPFGLILPVIHNPQIKLCLDTFMLSTSMN----ILYIGAYP-ATHLWTILAFDPKITSDWTDAMAKATGAKVIGVSSKLSVIDDTWVETD-YEKFQSEKQAYFEWLSIDVRLIWNRSKDTSQPYGIREMRAFFHKKGKILAAETEKYMDDFTMSVSDQINTQKFM |
9 | 3i95A | 0.11 | 0.08 | 0.74 | 0.74 | CNFpred | | ------LVIENRCYQTP-----QFRKMHLQLAKVGLDILHCVMFPEPLYGLPLFGCDIVAGP------------------GGVSAAIADLSPT-QSDRQLPAAYQKSLAELG-PWGEIFSE-------------YCLFIRPSNV-TEEERFVQRVVDFLQIHCHQSIVAEPLS |
10 | 3akjA | 0.06 | 0.05 | 0.75 | 0.83 | DEthreader | | NKKFPPTNGSEVAIVNSL--G--LK-V--------------QETLLGIVVACKDFLDFLTNLDVLYAIQHIEPVLFFWMFVADT-LLGLYPADVVKVDELNARIYNFPQSILKD------------------------ALLRIYPRIDMNKIHSIIDNKEHTLDERKSKIIVA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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