Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | GCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDLDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV |
1 | 5lvyA | 0.10 | 0.04 | 0.47 | 0.71 | DisCoVER | | SCSLSIS------------SP-D--PVTYTIDK------GDKYINFKLDVKALGGTVYFWGADTRDGKLVMKKYTLMTTYGGAVQQQLGGGYGYYHVSQKTP--PQ--TISGVVSKN---------------V----------------------------------------------------------------------------------------GYKPGQY----------TVELTGFFSLN-----D----------NKQANPTPSSLKKNIVSSTGTIT- |
2 | 1dgjA2 | 0.03 | 0.02 | 0.68 | 0.67 | DEthreader | | ----QCGFCTPGFHNIGYKPLARSAVKAEFG------MP--------------------------MSAPMVDQLEE--TVFFNDPANVVAEGSYYTQR-QPH--LPIEPDVGSKSVHKFSRSGLTRGAQYIAIADTTSGQIPEV-MSLPE--MFDKMRPYYEESKKR-----------------------------VG--VA--LG--VYG-AGLDDHGQGADALVMNDPASQVIVDIYGGLGVGLALSEGPKMIPIEIPAINGIYNCGARVR---HLPA--------- |
3 | 5bp2A | 0.09 | 0.08 | 0.96 | 0.43 | CEthreader | | PSVSVHPLLGSHVVLPQEPEEHLWQGDVGTEAHPWLSVHQVAVLPGAAYCEMALAA----VTPVLGDTGEVHDLKFHDMLLLDDATPVWVSAAVTAPGTAEFGVETHQSGDRTQRATAVLRGDVDAERPAAHS---------IDALLAAHPNRVDGDELRAGFGTVGIGHGAAFAGLSEAYVATAAEPTVVAAVALPGPLRSGQRGYTVHPALLDACFQSVIAHPEVQNIASGMLLPLGVRRLRAYGSTRNVRYCLSRIADSFGVEADLELLDADGTVLLSAMGLQLGT |
4 | 5n5xA | 0.06 | 0.05 | 0.84 | 0.57 | EigenThreader | | NLVGIIDIKGNWSINQIFDPEELSSWKRIWFSHF---QKILVFDREIDFNIRDYKRI--DDKNGASESNDPVRRISWKHDLDPDDTTLPDHILLAFVYSMR---------HKREIPGGTPTGIETIFELVEHENSHDEDKYLQDLGYRLSIATNELLESWQKTKDESILSGSLSHSKLKNLLFASIPEFSSLLDQFFQYYHLFLHDIFYNKLLQCWVL---------VSPQAELLTKEIVKKP---------SLFEPIQNEISRSLSGPWDMDD--------------- |
5 | 5t96A | 0.18 | 0.10 | 0.56 | 0.32 | HHpred | | -------------------PTGAIVGLVGRTDAV-TGFSVKVL--TFSSPT--IVVVGLNGMSGIYK-VCIAATSGGLING-CGYFNTPLRFDNFQG---------------------Q---IYVSEVRGTNKSDTPL------------------CSHIM----RNVELDEYVD-TPNTGGVYPSDGFDSLHG-----SASVRTFLTDALTCPDIDWSRID--AASCEYDSCPKMVKDFDQT---------------------------------------------- |
6 | 3m1cA1 | 0.16 | 0.11 | 0.66 | 0.31 | FFAS-3D | | ASTWPVGVWTTG-------------GLAFGCDAALVRARYMGLVISMRDPAEIIVVPADKTLARVGNPTDENAPAVLPGPPAGPR-------YRVFVLGAPNGSALDALRRVAGYPEESTNYAQLGEDPGSGTDARPSLFWRLAGLL----ASSGFAFVNAAHAHDAIRLSDLLGAAGCAADSVFLNVSVLDPAARLRLEARLGHLVAAILERE--------------------------------------------------------------------------- |
7 | 3iz3A | 0.05 | 0.04 | 0.90 | 0.68 | SPARKS-K | | ISADFIICDINSYEDQSFESSAATRALVKINHGGVFYHTALLKTASYSYETYIYITPIFPFYSNSAMINMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKS-YCSE--------ATTWRVDSDDNLVNIIARIDP------------ARIALEFRTRSNTSAYHEYQRYVPNGLGFKVEFRYMHREV--------TFIHKLMMYALIREQISLTENMGRNLADISVVPLNMKYVVIDPATRIETLKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNE- |
8 | 5l24A | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | | --------------GMAVIAVLLSTDRK--------------AINTVAFIQ-L--------GEASKTINVIAYGNNVDVSEMFFGGGGFVFRVMIFSMMIKIGGFLQKMLGTSKAESMSALVGASVGGIAIAVG-ASLLAFVALIAMINIITLQAILGWLFSPLAWVIG-----GIAGSLIGQINFVYSVKYLKLDKAIISFALCGFANLGSIAVLVG-------R--DVRLGIAVVSLSNLMSA-------VIAGL------FTGLSG-------------------- |
9 | 5az4A | 0.12 | 0.11 | 0.96 | 0.54 | MUSTER | | KVNLDITLNGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTGVKAVK-DGSGIDFVNDNADGTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSLWTATNITFTPQPPQAATNVQLT-------GGLNAQIITAHKYIYSSNPVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWVNGGLLNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTV-----PPNAINGVGNATTTDPKNMSFNITAYSNKQ |
10 | 3fahA2 | 0.04 | 0.03 | 0.70 | 0.67 | DEthreader | | ----QCGFCSPGFRNACGYKPLAPRAVAK----------TLDYGA-----------------SGP-AAVFEQPIVK--DTGP-FASAVTVEGDFYVGR-QPH-MPIEPDVASKSIGVKFSFGLLTRGAQFGAIPYDTNQEPEVFSLPDMIDQLRPKYQAALEKAQKE----------VGIS-I----------------------G--VY--GSGLDHQGADIGVFTWPSRQQMLTDIYGLAGGLEDFEGAGFPQIPPAINAIKATGVRIYR-----LPA--------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|