>PF06809 (341 residues) MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPDATTCPGSLDCALKRRAKCPPGA HACGPCLQSFQEDQRGFCVPRKHLSSDPSVVTMETKIVKLWMGPSISGGCLLQELALKEK EAGHSRLTAQPLLEAAQKLLEPAATLGFSQWGQRLEPGLPSTHGTSSPIPHTSLSSRASS GPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAALCWCRLQREIRLTQKADYAATA KGPTSPSTPRISPGDQRLAHSAEMYHYQHQRQQMLCLERHKEPPKELESASSDEENEDGD FTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHSLPPLQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPDATTCPGSLDCALKRRAKCPPGAHACGPCLQSFQEDQRGFCVPRKHLSSDPSVVTMETKIVKLWMGPSISGGCLLQELALKEKEAGHSRLTAQPLLEAAQKLLEPAATLGFSQWGQRLEPGLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAALCWCRLQREIRLTQKADYAATAKGPTSPSTPRISPGDQRLAHSAEMYHYQHQRQQMLCLERHKEPPKELESASSDEENEDGDFTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHSLPPLQ | |||||||||||||||||||
1 | 6w17B | 0.05 | 0.04 | 0.66 | 0.74 | DisCoVER | ------------------------------------SAPIVLDNGTGFVKVGYAK-DNFPRFQFPSIENGIKGRKILLTEPMFERYGFGGVYVA--IQ--AVLSLYAQG---------------------------------------------------------LSSGVVVDSGDG----VTHIVPVYESVVLLVGRL--DV-----AGRDATRYLISLLTVREMKEKLCYVSYRNYTLPD-VIKVGSERYEC--PE-CLFQPSEFIFDTIQAADVDIRKYLYRAIVLSGGSS---MYAGLPSRLEKEIIEDARRHAVFIGGAVLADIMADHMWVSKA- | |||||||||||||
2 | 1kqgA | 0.05 | 0.04 | 0.71 | 0.67 | DEthreader | -EIRNTCGCSALCPKGLDYVSNR---P--RAPILMSTGMLAVDNQARVHGPTVSLGAMTN--ALRGHSNILTDLGLLSTS-P----SFLP--GY-FCQ--GFNP-ASFP-KNKVVSCLSKLVSIQTEVFR-LP--STCFAEEDGSIALQWSAWPLIMQMG---------FPEHYEPIETPLG---------SNPVVRLYEQDAR----------HTWTKHALLNAIAQ-PEQFVEISELAAGINNG---------DR--VT-V--S-SKR-GFIRAVAVVTRLKPLNVN-----VE--TVGIPIHWG-----------IANTLT---PNV----------- | |||||||||||||
3 | 6jyxA | 0.07 | 0.06 | 0.84 | 0.56 | CEthreader | ----------------------GWQFVQENGRTYYKKGDLKETYWRVIDGKYYYFDSLSGEMVVGWQYIPFPSKGSTIGPYPNGIRLEGFPKSEWYYFDKNGVLQEFVGWKTLEIKTKDSVGRKYGEKRKRYYTNYYFNQNHSLETGWLYDQSNWYYLAKTEINGENYLGGERRAGWINDDSTWYYLDPTTGIMQTGWQYL------------------GNKWYYLRSSGAMATGWYQEGTTWYYLDHPNGDMKTGWQNLGNKWYYL----------------RSSGAMATGWYQDGSTWYYLNAGNGDMKTGWFQVNWYYAYSSGALAVNTTVDGYSVNY | |||||||||||||
4 | 6thkA | 0.08 | 0.07 | 0.87 | 0.62 | EigenThreader | --GDLIQREIYLQKNIPVRSIFEQGTKEKKEINKKVSDQVDGLLKQITQ-------------GKREATRQE------RVDVMSAVLHKMESDLEGYKKTFTKGPLERAVAYYKQDSLSEAVKVLRQELNKQKALKEKEDLSQLERDYRTRKANLPPLVSPTPEQWLERATRLVTQAIADKKQLQ---TTNNTLIKNSP--TFTADFYKEVTEKFGAEAIKSFEKHKDALNKKLSLKDRQAIAKAFDSL------DKQMMAKSLEKFSKGF----------GVVGKAIDAASLYQEFKISTET----GDWGAAASWLVGIAFATATATPIGILGFALVMAVT | |||||||||||||
5 | 1vb5B3 | 0.20 | 0.04 | 0.20 | 0.37 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYVVNKAGTYLLALACHEN----AIPFYVAAETYKFHPTLKSG---DVMLMERDLIR---------GNVRIRNVLFDVTPWKYVR---------- | |||||||||||||
6 | 1cnt1 | 0.12 | 0.05 | 0.40 | 0.60 | MRFsearch | -----RDLCSRSIWLARKIRSDLTALTESYVKHQGL---------------------------------------------------WSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFT------PTEGDFHQAIH-----------------------------------------------------------------TLLLQVAAFAYQIEELMIL---------------LEYKIPRNEADGMLFEKKLWGLKVLQELSQWIHDLRFISSH------------------------------------------------------------- | |||||||||||||
7 | 1o9iA | 0.13 | 0.09 | 0.69 | 0.54 | FFAS-3D | YNAKPDRSDPIMARRLQESLGGTTGMMSFLSQGWASTGAEKYKDLLLDTG-------------------------------------------TEEMAHV--------EMISTMIGYL-------LEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGN---------------------LVADMRFNVVRESEARLQVSRLYSMTE----------------------DEGVRDMLKFLETQHQLQFMKAQEELEE--KYGIIVPGDMKEIEHSEFSHVLMNFEGQVAKDGEKQENPEAGIPHIKPGDPRLHNHQ--- | |||||||||||||
8 | 7aavA | 0.10 | 0.09 | 0.89 | 0.92 | SPARKS-K | HLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADEPPPLLVYKWCQGINN---------LQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVITNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYID----------RIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKK----CWPRDARMRLMKHDVNLGRAVFWDIKNRL-------------PRSVTTVQW-ENSFVSVYDNPNLFNMCGFECRILPKCRTSYEEFTHKDEVTKERT | |||||||||||||
9 | 6zjkC | 0.12 | 0.06 | 0.47 | 0.81 | CNFpred | ---------DGERNAFDKIISFLNFLDSVQSENLPNISRYITAAEVSSLLNIQTFQEIHAQSYSYILDTVTNP------------------ITRDKIYDQWREDEERNKFIAGIYEKFNKEP------------------------------------------------------------------------EIHNFLRAIMANYILEGIYFYSGFSFFYTLARQGKMTATST-------------------IFKYINRDEVTHLVLFQNIIKEL---------------------------------------------------------------- | |||||||||||||
10 | 5u1sA | 0.08 | 0.05 | 0.62 | 0.67 | DEthreader | --------------------------------------------------------------------------------------KRKLVDYLHILLFSHDKRYLLKDLKALTFQYIKQPFKKFVFSNLLYLEMGNKILECNMSENRLCLWSIREGPKNKDLRQFCTVY--IDSAAASSSFLLKKILKITKFSIE--GSKNKLSQGSRLALLKSSIIRFTSTMLNLWKLHLGKDI---------DDSICLSYMPNVINRVHNMWQKVMSLEEDFFKGMFES-PSIYVLDILN-YIDFSMLLEQIYRTMTTNS---------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |