>PF06728 (376 residues) LAAAALRLLLFVAFPGLPDLLTGRVEISTPVTSFKRLQEGLFLYDHNVSPYDGGVYHQAP LFLPLFSLLPDPKSLPIFTYLLYIAFDLLSADALAKIADSGEAGSSRLFTSPRRAKRWSG LAVASLYLFNPFAIASCIGRSTSIFSTCAILHAIAKAISGASLSSMVALSFASYFSMYPL LLLPPLVLLAHDRHPRTSPSSPITPFILTHLLVVAASLAALLLMSYLLAGNSWTFLRSTY GAQLSLNDLTPNVGLWWYFFIEMFDSFRAFFLAVFWLHMASYVMPLTLRLRSQPLVVLTL LLGLFAIFKPYPSVADTGLFLSMLPLFRHVFPLMRYTFVGVATIMYASFLGPAFYHLWIY AGSGNANFFYAITLVW |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LAAAALRLLLFVAFPGLPDLLTGRVEISTPVTSFKRLQEGLFLYDHNVSPYDGGVYHQAPLFLPLFSLLPDPKSLPIFTYLLYIAFDLLSADALAKIADSGEAGSSRLFTSPRRAKRWSGLAVASLYLFNPFAIASCIGRSTSIFSTCAILHAIAKAISGASLSSMVALSFASYFSMYPLLLLPPLVLLAHDRHPRTSPSSPITPFILTHLLVVAASLAALLLMSYLLAGNSWTFLRSTYGAQLSLNDLTPNVGLWWYFFIEMFDSFRAFFLAVFWLHMASYVMPLTLRLRSQPLVVLTLLLGLFAIFKPYPSVADTGLFLSMLPLFRHVFPLMRYTFVGVATIMYASFLGPAFYHLWIYAGSGNANFFYAITLVW | |||||||||||||||||||
1 | 6snhX | 0.13 | 0.12 | 0.93 | 1.17 | DEthreader | FVAVILRCTIG--LG-PY-SGKGS-----Y-GDFEAQRHWMEITHLPKWYWYDLGLDYPPLTAYLLGLGSWFFGLKTYMRSTVIISDILYFPAVIYFTKWLGRY----R---NQS-PIGQSIAASAILFQPSLMLIDHHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRS-LLFPKFN-IARLTVIAFATLATFAIIFAPLYFL-GGGLKNIHQCIHRIFPFARGIFEDKVWC-VKYKETIQQLQLYSLIATVIGFLPAMIMTLLHPKHLLPVLIACSMSFFLFSVHEKILIPLLPITLLYS-ST--DWNV-LSLVSWINNVALFTLWPLLKKDGDYPDLVLLNCAVGFICF | |||||||||||||
2 | 6snhX | 0.12 | 0.12 | 0.94 | 1.17 | DEthreader | FVCAVILRCTIG-L--G--PYSGKGS----YGDFEAQRHWMEITQHLKWYDLQYWGLDYPLTAFHSYLLGGSFNLKTYMRSTVIISDIFYFPAVIYFTKWLGRYR------NQS--PIGQSIAASAILFQPSLMLIDHHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRSLLFPK-F-NIARLTVIAFATLATFAIIFAPLYFLGGGNIHQCIHRIFP-FARGIFEDKVANFWCVTNKYKTIQLQLYSLIATVIGFLPAMIMTLLHPKHLLYVLIACSMSFFLFSVHEKILIPLLPITLLYS-ST--DWNVLS-LVSWINNVALFTLWPLLKKDGDYPDLWVLLNCAVGFCF | |||||||||||||
3 | 6snhX | 0.13 | 0.11 | 0.90 | 1.39 | HHpred | VCAVILRCTIG--LGPYSG--KGSPPLYGDFEAQRHWMEI--TQHLPLSKYWYDGLDYPPLTAFHSYLLGLINGLKTYMRSTVIISDILFYFIYTKWLGRYRNQ-----------SPIGQSIAASAILFQPSLMLIDGHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRSLLFPK--FNIARLTVIAFATLATF-AIIFAPLY-FLGGHQCIHRIFPFA--RGIFEDKVANFWCVTNVF-VKYKERQLYSLIA-TVIGFLPAMIMTKHLLPYVLIACSMSFFLFSFQVHEKTLIPLLPITLLYSSDWNVLSL-V-SWINNVALFTLWPLLKSNWLIGNFSLL---------- | |||||||||||||
4 | 3wajA1 | 0.09 | 0.08 | 0.83 | 0.90 | DisCoVER | AISVKLRILNPWNSVTVR--L--GGND-PWYYYR-LIENTI--HNFPHRIWFDFTTHFGPFLVYLGSGATSGESLRAVLAFIPAIGGVLAILPVYLLTREV---F--DKRA-------AV-IAAFLIAIVPGFLQRIGFNDHHIWEAFWQVSALGTFLLAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLP---------------FAFNYP----GFSTIF--Y---------------SPFQLLVLLGSAAAFYQSFPMALLIWAIAMFIAL--WGQNRFA--YYFAAVSAVYSALALSIPTYILADAQSSYAG-GPSWWDYGHWIEAVHRMPIANPFQ--- | |||||||||||||
5 | 3wajA1 | 0.11 | 0.10 | 0.95 | 0.37 | MRFsearch | --IAALISVKLRILNPWNSVFTWTVRLGG-NDPWYYYRLIENTIHNFFDPFTYSYTHFGPFLVYLGSIAGIGESLRAVLAFIPAIGGVLAILPVYLLTREV-------------FDKRAAVIAAFLIAIVPGQFLQRSILDHHIWEAFWQVSALGTFLLAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYFQLLVLLGSAVIAAAFYQGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFSFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSVVFDKLHFRVAFALLIALAAIYPTYIALTWMRENTKYDEYYLQLY--- | |||||||||||||
6 | 6snhX | 0.12 | 0.12 | 0.95 | 1.27 | SPARKS-K | VCAVILRCTIGLGPYSGKGSPPL-------YGDFEAQRHWMEITQH-LPLYWYDGLDYPPLTAFHSYLLFALEKSRGYMRSTVIISDILFFPAVIYFTKWLGRYRNQS--------PIGQSIAASAILFQPSLMLIDGHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRSLLFPKFNI---ARLTVIAFATLATFAIIFAPLYFLGGGLKNIHQCIHRIFARGIFEDKVANFWCVTNVFVIQQLQLYSLIATVIGFLPAMIMTLLKKHLLPYVLIACSMSFFLFSFQVHEKTILIPLLPITLLYSSTDWNVLSLVSWINNVALFTLWPLLKKDGLHLQYAVSFLLSNWLIGN | |||||||||||||
7 | 6snhX | 0.11 | 0.11 | 0.95 | 1.13 | MAPalign | -IIFVCAVILRCT-----IGLGPYSGKPPLYGDFEAQRHWMEITQLPLSWYQYWGLDYPPLTAFHSYSWFALEKSKTYMRSTVIISDIFYFPAVIYFTKW--------LGRYRNQSPIGQSIAASAILFQPSLMLIDHHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRS--LLFPKFNIARLTVIAFATLATFAIIFAPLYFLG-GGLKNIHQCIHRIFPFARGIFVANFWCVTNVFYKIQQLQLYSLIATVIGFLPAMIMTLLHPHLLPYVLIACSMSFFLFSFQVHEKTILIPLLPITINNVALFTLPYNVVWKSFIIGTYIAMGFYHFPPSKYPDLWVLLNCAVGFIC | |||||||||||||
8 | 5ezmA | 0.11 | 0.11 | 0.97 | 0.77 | CEthreader | ATGWVVLFVAVALVVWFVSLDMRHLVGPDEGRYAEISREMFASDWVTIRYNALKYFEKPPFHMWVTVVGYEFGLGEWQARLAVALSGLLGIGVSMMAARRWFG-------------ARAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPNFFFIHEYFLPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLAYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGM | |||||||||||||
9 | 3rceA | 0.11 | 0.11 | 0.95 | 0.96 | MUSTER | AFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGF--HQPNDLSYFGSSLSTLTYWLYSILSFESIILYMSTFFASLIVVPIILIAREYK-------------LTTYGFIAALLGSIANSYYNRTMSGYTDMLVLVLPMLILLTFIR-TLLLSPIFIMIYLWWYSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALWQYKLALIVLLFAIFAFKNFYMIWALIFISISIAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFM--FTIYAVPVMALGFGYFLYAFFNFLERNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILND | |||||||||||||
10 | 6snhX1 | 0.13 | 0.08 | 0.61 | 3.71 | HHsearch | VCAVILRCTIG--LGPYSG--KGSPPL---YGDFEAQRHWMEITHLPLSKYWYDGLDYPPLTAFHSYLLGLINGLKTYMRSTVIISDILFYFAVIYFTKWLGRYRN--------QSPIGQSIAASAILFQPSLMLIDGHFQYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAPIFFAYLLSRSLLFPK--FNIARLTVIAFATLATF-AIIFAPLY-FLGGLKNIHQCIHFPFARG--------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |