>PF06636 (366 residues) IYFVLLVVLAIYLIIYIIWDINDFISKIKNYINNDYSNLIMSKLPVNEEEIVEFNIIVGW MDNVILDRCLDGLQYSKIKPTLVFLSNLKTDDILAYGGFNKLLNYPINNIINRNGWIYNG YFILGNGNGDFICVDSNNSNIKRYDKNYTVDKLSINPGKTNDNIIVLNIIYKSEELLLIN INELSSDFNNSEYYEYLGNILLYIKNNYLNNKKFIICGSVGLNSKYINLAIETIFLDTVI SSCYNGSITYFNNNGLYAQTTFIILDKNLCSYGVRFGVKYLENEILKYNLLLYAYIYNEN YTGNKIEYFTDALSINIFESIKSRSDYIDDYVNWDKIDTSTLNTNFEYKKDYLKNDTSSY TKEILT |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IYFVLLVVLAIYLIIYIIWDINDFISKIKNYINNDYSNLIMSKLPVNEEEIVEFNIIVGWMDNVILDRCLDGLQYSKIKPTLVFLSNLKTDDILAYGGFNKLLNYPINNIINRNGWIYNGYFILGNGNGDFICVDSNNSNIKRYDKNYTVDKLSINPGKTNDNIIVLNIIYKSEELLLININELSSDFNNSEYYEYLGNILLYIKNNYLNNKKFIICGSVGLNSKYINLAIETIFLDTVISSCYNGSITYFNNNGLYAQTTFIILDKNLCSYGVRFGVKYLENEILKYNLLLYAYIYNENYTGNKIEYFTDALSINIFESIKSRSDYIDDYVNWDKIDTSTLNTNFEYKKDYLKNDTSSYTKEILT | |||||||||||||||||||
1 | 3j9dA2 | 0.07 | 0.04 | 0.57 | 0.64 | DisCoVER | -MDE--LG--IP-VYKRGF-----------------------------------PEHLLRGYEFII--DV--G----TKIMNAYDPRNDGFVLPRVLDIDSMDAQPLKVGLSRNVAHSLHNCVVKIKKADTMSYHVEP-NVVTTKQ--LLETYLASLCGGISDGIVWYLPITHPKCIVAIEVSDERVPA----SIRAGRIRLRF--PLSARHLKGVVIIQIDE---------------------------------GFTVYSEGI---VS---H-RVC-KKNLLKY-MCDIILLKFSG-------H-VF---GND--------------------------------------------MLTKLL- | |||||||||||||
2 | 1yiqA | 0.06 | 0.04 | 0.67 | 0.67 | DEthreader | VDGIMSTGR-Y------------------LAWSYK----G-EATPIVVVMYTTGPFSVVY-YDPQSD-NRGVAVWKGKVYVGVLDGRL----------------WSVDTRHRSYTIGPVVIGNGGAFGVRGYVTAYDEAWRFYVPGDPEGMATWFGDAYEQGGGGTAWDSFAYDPLYIGVGNGSLDWRSAKGDNLFLS----------------SIV------------------------------AVNADT---GEYVWHYHMILAELPRKVRATGELSAMPLAAAF--D--------------------GLVYIPA--HI--MSAYYETG--TIFNGGTAPFMAGWGGSTFYYCSQCVLDG-- | |||||||||||||
3 | 2wozA | 0.09 | 0.07 | 0.78 | 0.59 | CEthreader | -------------------------------------------------------------------PGYLNDIPRHGMFVKDLILLVNDTAAVAYDPMENECYL----TALAEQIPRNHSSIVTQQNQVYVVGGLYVPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG--------LSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQEFAPTEVNDIWKYEDDKKEWAGMLKEIR | |||||||||||||
4 | 6b39A | 0.06 | 0.06 | 0.90 | 0.63 | EigenThreader | ENLYFQSNALDKINRYAHGFVAVPVICACSEAGEQSQQHQIIPRWDTENSLLSDLLDGVLLIPLLLELKKQSTLFINLGWAEEKLGTTASYAPMLLQMKELLFGNIISIFNQQPIEEQPIYIVDMGC-GDGGVDY----NQEALDVTDKNL--------VDIPHLVIPGIEPEKVLHIRSFVDVDGKLIPPHIAVQSLVEHLERWSSIITRHGLLLEVHHLVEADVFLMAAAEV---GLFSRKEAFRKYPKTLPLTRITVNHFEKRHLLLEYQAAIFTETKNS----NEVLIREFLVRTSVENWQV--LAKDLLEFVEQWGVVKPGIKEIEGLLKYHEAISNFQKSKWYQS--------------- | |||||||||||||
5 | 1vd3A | 0.10 | 0.05 | 0.44 | 0.32 | HHpred | ----------------------------------------------------------------------------------------------------------CCYPTPDEDFSIHGLWPNYEGKWPQNCDRESSLDESE--ISDLISTMEKWPSLACPS--SDVRFWSHELK-----HGTCSALGERAYFQAALDFRKKSNLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDT----Q-GNHQIYQVYLCVDKTDCPIFPHGKIEFPP------------------------------------------------------------------------------------ | |||||||||||||
6 | 5m59A | 0.12 | 0.08 | 0.62 | 0.50 | MRFsearch | -VYVTQSAGRILRAIFEICLALNMCKMAEKRMWPTMSPLRQ-------YPTCPAEIIKKAERPKAGKTVCALVSKFPRVEIQGNVQPMLRIELTITPWDVELH------------GVTESFWILVEDDGEEILFHDVFILRKDLAEEHTVEFTVPISEPMPPNYFISVISDRSETRMPVSFQKLVSALKAKDYAALYPNWTQTFNSLYNTDNNVLVAAPTSGKTVCAEFALLRHWAKK-----DAGRAVYIA------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 4pz6A | 0.10 | 0.08 | 0.77 | 0.40 | FFAS-3D | ----------------DVRVLKTRIAKLLGTSPDTFPGS--QPVSFSKKHLQALK-----EKNYFVCEKSDGIR------CLLYMTEHPRYE-----------------------------------NRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKYHVDTLLDGELVLDIDCLACDGIVYM-SRLLDKRLGIFAKSIQKPLDEYTAIFPFLTSLKKMELGHGILKLFNEV--IPRLRHGNDGLIFTCTETPYVSGTDQSLLKKPKEMNTIDFMLEKLKSFNVPLSERIVECYLDDENRWRFLRFRDDKRDANHISTVKSVLQSIEDGVSKEDLEMPIIREAYYNRK---------------- | |||||||||||||
8 | 3btaA | 0.13 | 0.13 | 0.96 | 0.60 | SPARKS-K | SMIPYGVKRLEDFDASLKDALLKYIYDNRGTQVDRLKDKVNTDIPFQKNIINTSILNLRYESNHLIDLSRYAINIGSDKNQIQLFNLESSKIEVINAIVYNSMNFSIPKYFNSISTIINGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMI---NISDYINRWIFVTITNNRLNNSKIYINLIDQSNLGN--IHASNNIMFKLDGCRDTHRYIWIKYDKELNEKEIKDLYDNQSNSGILKDFWGDYLQY---DKP-----YYMLNLYDPNKYVDVGYMYLKGPRGSVNSSLYFIIKKASGNKDNIVRNNDRVYINVVVRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMN | |||||||||||||
9 | 2ycbA | 0.11 | 0.07 | 0.62 | 0.77 | CNFpred | --PVYCTAPTRDLMTLLQLDHIDIAHREDE------------PLPFNVKHVKKSVKHTITLD----------------GEVTDIAPDI---RLTLHNAG----------------HILGSAMAHLHIGQHNMVYTG----DFKYEQSRLLEAAANRF--PRIETLVMESTYG-GGKILIPVFAV------GRAQELMIVLEEYIRTGIIDEVPVYIDGM----IWEANAIHTARLSKDLRDQIF-DIFHKVNGMDER-EPSIILSTSGMLTGGNS--LEYFKWLCEDDNSLVFVGYQ--------------------------------------------------------------------- | |||||||||||||
10 | 6z2wE | 0.09 | 0.07 | 0.78 | 0.83 | DEthreader | SNDDLSPILPVRFRYIIPYAIIQYKSD-LS-----------LINQMKVNLLKSIFVALVKHGLFSLDILEGYITAYLDKTAEILYENANMILCSLRFLILNIGIFVF--------LRINGISLI--PKKSIIAL--ISICL-----------------YEAFRCWLVLNDEELSTVIDSLIIKWFNGKLRNIVYSILDTLIKEKSDLILKLKPYTT-A--GKPELGILARDFAMVNKIRS--------------------------TTDLIPIFANLSSNK--------YVINNLDIYLKSIDFTDITVLGALDTHKFLAQSENPSK--EGYKIVDGSLSNFL--SKETLLQLLMKHSLYSFLSAK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |