>PF06542 (380 residues) VNKAFNFGIIHSIRIEHQTVIFHKPTRCDIIRRCPNCTVNLNSVELNVKNIRKYARFLKQ TMKITVFKIIIEDLEFSCIDREIIHLALNDLFTDSDYERVEEFIGVDNICIAGCGECRKM IQNCKVYGPIQLDIFQSVMGQKRSFDALQITDEDLYVLLWLNKQKDPKLVENFINSIITC SKFTIFLTSIFEKKELGHSLPRELVDMLITKWNVKTVEIGFKNVTNDDFYQNTDYIDPKA KFYVDYRTQQRSMYTLDVVEINIKLTRIMEKCHGSLFNNFVPNVRTIFPSNKITLKLSKE VCKVLMNPDNVEDFISGVILMAQNDDHPNSHISLKLYPQQLRFRLITSFLCDNLVKLFGF WSLKSVSKISENERGKSFHF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VNKAFNFGIIHSIRIEHQTVIFHKPTRCDIIRRCPNCTVNLNSVELNVKNIRKYARFLKQTMKITVFKIIIEDLEFSCIDREIIHLALNDLFTDSDYERVEEFIGVDNICIAGCGECRKMIQNCKVYGPIQLDIFQSVMGQKRSFDALQITDEDLYVLLWLNKQKDPKLVENFINSIITCSKFTIFLTSIFEKKELGHSLPRELVDMLITKWNVKTVEIGFKNVTNDDFYQNTDYIDPKAKFYVDYRTQQRSMYTLDVVEINIKLTRIMEKCHGSLFNNFVPNVRTIFPSNKITLKLSKEVCKVLMNPDNVEDFISGVILMAQNDDHPNSHISLKLYPQQLRFRLITSFLCDNLVKLFGFWSLKSVSKISENERGKSFHF | |||||||||||||||||||
1 | 6fyqA1 | 0.06 | 0.03 | 0.45 | 0.65 | DisCoVER | --RLAEKIAS-----------------ITP----------------------------------------------------------------------------------------------------------------------EGLNAVFFT--S---------------------------GGSE----SNDSAVVRHYWK-IQGKPNKRKIISLKSYHGVATGITHYNTTQAVQS---LCQAIEEAGPETIAAFFAEPVQGAGGVIIPPEDYFL-RIREVCNAYGILFVADEVITGFGRKMFGI-EN--WD--V-----------IPDVMTFAKGV--TSGYFP--LG-GVVVSDIHEVLK------------ | |||||||||||||
2 | 2w5fB | 0.07 | 0.04 | 0.63 | 0.67 | DEthreader | ------------------------------------------------------------------DGW---------------C--NLGVDTYLTAVGMAYSEKSVSYKEVIATLSITTFIFDDVT-SE--DATLVQSGRVSLALVGHTWHSTPQFF------SQSVMDQRLESYNMFILAYDVNAAVSDDANRTGARSNIEKAFTYARKYAPCKLYYNDYNE-------YWDHKRDC-IASICANLYNKG-LLD-GVGMQSHINADMNGFGIQNYKAALQKYINIGCD-VQITELDISTEGFLQQADKYKAVFQAAVDINRTSSKG-KVTAVCVWGTWLG------------------------------------PA | |||||||||||||
3 | 1tvnA | 0.07 | 0.05 | 0.64 | 0.59 | CEthreader | AEKFYTAETVAKAKTEFTLIRAAIGHG------TSTGGSLNFDWEGNMSRLDTVVNAAIAEDMYVIIDFHSHEAHTDQATAVRFFEDVATKYGQY--DNVIYEIYNEPLQISWVNDIKPYAETVIVVGTPTWSQDVDVASQNPIDRANIAYT--LHFYAGTHGQSYRNKAQTALDNGIAL-FATEWGTVNADGNGGVNINETDAWMAFFKTNNISHANWALNDKNEGASLFTPGGSWNSLTSSGSKVKEIIQGWGG---------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 2p1oB | 0.06 | 0.04 | 0.76 | 0.68 | EigenThreader | AVPLEKLATLLQRAPQLEELGTGGYTAVALSGCKELRCLSGFWDAVPAPAVYSVCS-----RLTTLNLSYATVQ----------SYDLVKLLCQCPKLQRLWVLDYIEDA-----GLEVLASTCKDLVALTEQGLVSVSMGCPKLESVCRTNAALITIARNR---------------PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-----------------GLLTDKVFEYIGTYAKKMEMLSVAFAGD----------SDLGMHHVLSGCDSLRKLEIRD---------CPFGDKALLANASKLETM---RSLWMSSIDERGAPDSRPES-------CPVERVFIYRTWNMDQ--------- | |||||||||||||
5 | 6c0fK | 0.19 | 0.09 | 0.49 | 0.30 | HHpred | --ERVIKAVNELIKFTSK----PKN-LLEDDEEELKKDLQVNNKLLNVKH--SFYKPWKSVKDFKVL-LILKDS-----DIKKSEDDLF-DQLDSEGIKVDEIICGKDLKT--------------VYKAYARNAF------ISQFSLILADDSIVTSLPKLHATTLTNNIKKVYMNRGTTLNVH--LG--------NLELRPEISEQLIKAYQIRSIFIKTNRSPVLPLYYNQD-------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6xrsA | 0.09 | 0.06 | 0.63 | 0.50 | MRFsearch | --FEMAKQTLQAVDEADAVVFLVDG------------------RTGLTPQDKIIADRLRQS--PRPVYLAVNKGEDRAVLAYYLIEEILENFPEADAHPVFAVIGRPNV--------------------GKSTLVNAILGEKRVIAPFTIIDKFS----------VIKAMQAVEA----ANVAVLVLDAQQD----IADQDATIAGFALEA--GRALVVAVNK--------------------------------WDGISEERRE-------------QVKRDISRKLYFAKFHFISALK-------ERGIDGLFESIQAAYNAAPPVRPKMRYAHQGGM----------------NPPVIVVHGNSL------------ | |||||||||||||
7 | 4i6jB | 0.11 | 0.09 | 0.82 | 0.62 | FFAS-3D | VCRNWNQVFHM--PDLWRCFEFELNQPATSYLKATHPSFKVDS---SKESAEAACDILSQLVNCSLKTLGLISTALPKSHFISALTVVFVNS-----KSLSSLKSLKVLVANNSDTLKLL--KMSSCPHVSPAGILCVADQCHGLRELALSDELLLALSS--------------EKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEE----FDPFFRYEIPATHLYFGRSVSKDVLGRVELVVCANG------LRPLDEELIRIAERCKNSAIGL-------------GECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRW------------------- | |||||||||||||
8 | 4i6jB | 0.09 | 0.08 | 0.86 | 0.71 | SPARKS-K | VCRNWNQVFHM--PDLWRCFEFELNQPATSYLKATHQYVSFKVD-SSKESAEAACDILSQLVNCSLKTLGLISMDLPKSHFISALTVVFVNS-----KSLSSLKVDDPSLKVLVANNSDTLKSCPH---VSPAGILCVADQCHGLRELALNYHLLSD-------ELLLALSSEKHVRL--EHLRIDVVSENPGQTHFHTIQKSSWDAFIRHS--PKVNLVMYFFLYEDPFFRYEIPATHLYFGRSVSKDVMTCPRLV--ELVVCAN------GLRPLDEELIRIAERCKNSAIGLGECEVSC------SAFVEFVKMCGGRLS-------QLSIMVLIPDQKYSL--EQIHWEVSKHLGRVWFPDMMPTW---------- | |||||||||||||
9 | 4k17A | 0.11 | 0.08 | 0.79 | 1.05 | CNFpred | LSTDVCEQILRVVSRSLEELVLENAGRIDFAQK--LHTINLAGNSLEDRGVSSLSIQFAKL-PKGLKHLNLSKTSLSPKGVNSLCQSLSANP--LTASTLTHLDLSNALRGDDLSHMYNFLAQPNT-TECSLEMVCSALLRLQCLAVLNLSRSVFSHRK---GKEVPPSFKQFFSSSLALIQINLSGTKLSP------EPLKALLLGLACNHSLKGVSLDLSNCELGHCLRSGGAQVLEGCI-----------AEIHITSLDISDNGLESD-----LSTLIVWLSKNRS--IQHLALGKNFNNM--KSKNLTPVLDNLVQMIQDEDSPLQSLSLA--------------------------------------------- | |||||||||||||
10 | 3gozA | 0.06 | 0.05 | 0.73 | 1.00 | DEthreader | -----------------NYKLT----------------L------HPGSNPVEEFT-SI--PHGVTSLDLSLNN-L-Y--SIS-TVELIQAFANTPASVTSLNLSGNSLFKNDEVQILAAIPAVTSLNLSLKELVKTLAAIPFTITVLDLGWNDFSSK-S-S---SE-FKQAFSNLPASITSLNLRGNDL----GIKSSELIQILAAI--PANVNSLNLRGNNL----------ASKNCELAKFLA----SIPASVTSLDLSAN-L--LG-LKSY--AELAYIFSSIPNHVVSLNLCL-NCL---H---G-PS-LENLKLL-KDS-LKHLQTVYLDYD--I-VKN-SKEQCKALGAAFPNIQKIILVDKNGK-I------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |