>PF06503 (360 residues) MERSSREHSKYSKANTLNETYQMRMYKDDSTPDYCYSEISVGLSSSSPKMSLSDYFSAVS VTYGDEARLDEYKPLLYSDLLFAESYELDVDINLLVWQLLSSNQDSKSLCVNVLRMLHTY SLGNAYMGGGIYHFSQGTNTETLSDIVDILRLIGRLAKIIIKTKFSQMELKCVQTHLIYY FTGKAYKSLSLSWDSKSILSTSNGYSTSEGLLDYYIRNKLDLFKALYSKNLVYGGNYYLI YQVLVYYYIITNGRYSTGFNLRKDSIKHYNIPNDNPKMCNSILPRKPNLSMMYIRAILIM VMIKDYSPIKLVPLYLNALEIEDPAYMSSRITDGGIRMETDNMASTPDISRVLPAYFNGV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MERSSREHSKYSKANTLNETYQMRMYKDDSTPDYCYSEISVGLSSSSPKMSLSDYFSAVSVTYGDEARLDEYKPLLYSDLLFAESYELDVDINLLVWQLLSSNQDSKSLCVNVLRMLHTYSLGNAYMGGGIYHFSQGTNTETLSDIVDILRLIGRLAKIIIKTKFSQMELKCVQTHLIYYFTGKAYKSLSLSWDSKSILSTSNGYSTSEGLLDYYIRNKLDLFKALYSKNLVYGGNYYLIYQVLVYYYIITNGRYSTGFNLRKDSIKHYNIPNDNPKMCNSILPRKPNLSMMYIRAILIMVMIKDYSPIKLVPLYLNALEIEDPAYMSSRITDGGIRMETDNMASTPDISRVLPAYFNGV | |||||||||||||||||||
1 | 4a0fA1 | 0.09 | 0.05 | 0.57 | 0.61 | DisCoVER | TAALLLLYLKPIQTGFPSDSDSRVFSLDSLSPISISNSVLHSSLP--AAKSLNVGCSLNFRDEKTVTGA--PELLCKTLYAWE-AAISPHL--AAERE-------NAT--VEDSVVLQIEDLCLVETAGPGPSGT---------------LQCD-LY----------------RPFRL---------PGIL------VGD-GRLGITIA-AYESL-------------------KLR--GY--DIAAVVFEDHGLVNEPLTSYLRNKVPVLVLPPVPSVFKALK-------ETVLANLERLE---------------------------------------------------------- | |||||||||||||
2 | 5xq3A | 0.07 | 0.05 | 0.75 | 0.83 | DEthreader | --GNVRLGNI-VV---ARTLVTVRGNHTV--PWLPFVVRFYLYANS--------KV--H-SIV--D-DTPYGIARTSEVNDWYGYGDFHDPDLFFWLYFLRTGSKYRFAEALTRHTGEVDVY----------RHGVQHWSDSA--KQ-ARISQPQYRKYFFYLGGDERVGELLEELLDTDKTYEL---GWLIEWERR----PRWEEAK-TKLTNTIAGIAN------------------------F--GSG--L-YDP----------VTWTLGPPDP-NRGNVSISHLNAVFG-LPEVVSEAIAYADI-FKQAWLDYCYYYHASAELHSRL--AYAAYKTLLRKDSDGQLAQAYVSD-- | |||||||||||||
3 | 1lrzA | 0.07 | 0.07 | 1.00 | 0.57 | CEthreader | PYSHFTQTVGHYELKLAEGYETHLVGIKNNNNEVIAACLLTAVPVMKVFKYFYSNRGPVIDYENQELVHFFFNELSKYVKKHRCLYLHIDPYLPYQYLNHDGEITGNAGNDWFFDKMSNLGFGFDPVLQIRYHSVLDLKDKTADDIIKNMGLRKRNTKKVKKNGVKPIFRSFMDDKFYYNRLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYNAEIIEYVGDFIKPINKPVYA | |||||||||||||
4 | 4rg6A | 0.06 | 0.05 | 0.89 | 0.60 | EigenThreader | QEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSLFLLATCYYRSGKAYKAYRLLKGH-------SCTTPQCKYLLAKCCVDLEFGDSACFTLSLLGHVYCKTDRKGSECYQKSLSLNKGYLALCS----------YNCKEAINILSHVLCQIGRAYFELS------EYMQAERIFSEVRRIENYR---------VEDLTDMDKNSPEAWCAAGNCFSLQIKFFQRAIQVDPNYAYAYTLLGHEFVLTAIRVNPRWYGLGMIYYKQEK---FSLAEMHFQKALDINPQSSVLLCHIGVVQHALKAIVIDPKNPLCKFHRASVLFANALQE---LEELKQIVPKESLVYFLIGKVYKKLGQT | |||||||||||||
5 | 6h3pA | 0.13 | 0.06 | 0.47 | 0.33 | HHpred | ----------------------APAYAPA-----AT--A--G------EHSLVEFFVRAHYQFPQDLPSPLFPTKPSPKVL-HP-FASLVTVNDAIWKMFTVDGDTVALDLACLQVLSQR------IHIGKYVAEVKFK--DAPQEYSRLIKSNSLMDMLTFKAVEEKVKKRVEKKARTFG--QNV---TLDDNAT---AGDSECKVDPKVLSKLYDQWVPLTKDV-------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6wm5A | 0.12 | 0.06 | 0.51 | 0.45 | MRFsearch | -----------------------------------------------------------------------------------------NDNLKTAEKLLLSSLISRAAFARITLPLARALLRI----------------GLTPDAVTIIGTTASVAGALVLFPLFPGACVVWFFVLFDMLDGAMARL---------------LDAACDRISDGAVFSGLLWWIAFGMRRLLVVATLTCLVTSQVISYIKARAEADGGIIERPERLIIVLV----------------AWPPALPVAMWVLAVASVITLGQRLHTVWTSPG---------------------------------------- | |||||||||||||
7 | 3f5cA | 0.12 | 0.07 | 0.59 | 0.52 | FFAS-3D | ------------------------------------------------------------------------------------------SIPHLILELLKCEPDEPQVQAKIMAYLQQEQSNR-------------NRQEKLSAFGLLCKMADQTLFSIVERELKVDDQMKLLQNCHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFD-------QREFVCLKFLVLFSSDVKNLENLQAALLDYTVCPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR------------------------------------- | |||||||||||||
8 | 6djyA | 0.12 | 0.08 | 0.69 | 0.64 | SPARKS-K | --------------------------------------MTLTYWDKEKRMTLKQMIQQVAINEQENELTHYVFTTPLSMPTFGKPMLGYVPLNVATSKFFSNDFDRD----NQLAMAH---FPDTTITQA-YNLTNSIDTSLPDAEVAALKWFWKFFTSI--NLVRQPPMDNVMYWACQFLSGTSFRDVEIVFSG---------FKGSHICMFSNLRILCPYYDLITNFKTTYHEELKSLLTYLCLCTIVGLCDTFTETRNMDTGEYVWKVRDVVSR--NHTPAQNTIQNAKYMIQLVHVLLFPLTDNK--------------------------------------------------- | |||||||||||||
9 | 3vw5A | 0.07 | 0.04 | 0.58 | 0.71 | CNFpred | -------------------------------------------------------------------------------------------HSRILWFYSNAYDELLDNAKHAYEFIKNNCIDYGGV---YWMMDFEGKPADTKHTYNIAFAIYALSSYYRAS--GDKEALALAYRLFEDIEKNTLYGYREAFDRQWRLVDNEALSKADKTMNAILHLIEAYTELYKA-----DGNEKVADRLKFQLGQMRDI----VYTPDTNALKVFFDTAFNLV------GDIHSYGHDIEATWLMDRACDVLGDEDLKKQFAEMDL---------------------------------------- | |||||||||||||
10 | 5a22A | 0.07 | 0.05 | 0.68 | 0.67 | DEthreader | DNLIRKFNSLWDGVLEMLTSCQANPIS----TSQMKW---------KV-RRSSHGTNI-SEGW---DRNF-LMVVGNFSYDLIKMVEPICKLKTVDLTLV---------------L--SSGQG----------LKSYEAICIAICYLNPIFVIRGLETKRWSRVSVSTNALTVAHFAER-AYL-GSKTSEVRRLRLSHSWTKRQHGFKRTGSALHRF-SHG----ATTDTMRD-G-----Q-----------------------------------------------IGFLYGDLDSSLFPLQGRIRGRGFLKGLLDGLMRASCCQVI-----------RPANAVYGLILDLSLTRLEI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |