>PF06334 (244 residues) MGNKNIKPSKENRLSILYKDRMDSFKRGSWATSSFREKSHATIQRFSSLRREHVKVDHPD KFLELKREIYAIIQKSSSIDVDKRTKLMSNIKTMMINPFMIEGLMTSLESLDPDNKMSYS SVMILGEFDIINISDNKAAFEFINSLLKSLLLLNTSQLKLLEYSISNDLLYTHINALEYI IKNTFNVPERQLILRCQYLTPIFSDLLKYAGLTIKSNILMWNKKFIKPVSDLYTSMQLLH CVTV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MGNKNIKPSKENRLSILYKDRMDSFKRGSWATSSFREKSHATIQRFSSLRREHVKVDHPDKFLELKREIYAIIQKSSSIDVDKRTKLMSNIKTMMINPFMIEGLMTSLESLDPDNKMSYSSVMILGEFDIINISDNKAAFEFINSLLKSLLLLNTSQLKLLEYSISNDLLYTHINALEYIIKNTFNVPERQLILRCQYLTPIFSDLLKYAGLTIKSNILMWNKKFIKPVSDLYTSMQLLHCVTV | |||||||||||||||||||
1 | 6n9oA | 0.16 | 0.14 | 0.86 | 1.17 | DEthreader | ---------------PNTWQTLLH-----ERHLR-E--VYVVTRVAQLLFP-K----T-EDFQGLRAEVETISKELELLDRELCQLLLEGLEGVLRDQLALRALEEALEGQSLGPVEPLPAGAVLECLVL----LVPELAIPVVYLLGALTMLSETQHKLLAEALESQTLLGPLELVGSLLEQSAPWQERSTMLPPGLNSAPAWVLLDECGLELGDTHVCWEPQAQGRMCALYASLALLSG-LS | |||||||||||||
2 | 4bx8A | 0.05 | 0.04 | 0.80 | 0.83 | DEthreader | ---------EYLT-----FTLKGNRLPAADVKNIIFFVILFVPYSLDLMHKGLIFGKGECLDRNVDLLTPLTQGEIFIVTTSDFFDKLTVEQEFMSGI-DTDKVNSGLKQK---------VLDYYKREILTYHILLHNLEGLLKPQTGRNNYPTRKTLRLWMDDVNEQYVYSGYAPLSVRLALLGWHFEEFFLGG---VTFAEIAALRFLYVIA---TTK------------NG--WI------ | |||||||||||||
3 | 6n9oA | 0.17 | 0.16 | 0.93 | 4.90 | HHpred | --EVEVTTVTIPSGSTLARVAQLVID-SDLDVLLFPDKKQRTFQT--------------EDFQGLRAEVETISKELELLDRELCQLLLEGLEGVLRDQLALRALEEALEQGQSLGPLDGPAGAVLECLVLSSGMLVPELAIPVVYLLGALTMLSETQHKLLAEALESQTLLGPLELVGSLLEQSAPWQESTMSLPPGLLGNSWGVLLDECGLELGTPHVCWEPQAQGRMCALYASLALLSGLS- | |||||||||||||
4 | 6ao3A | 0.21 | 0.16 | 0.75 | 1.38 | DisCoVER | ---------------------------------------------------------AD--FQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGLGVEPLDGPAGCILECLVLDSGELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPW-QEQSSVSLPLLKNPTWVLLEECGLRLESPQVHWEPTSLIPTSALYASLFLLSSLG- | |||||||||||||
5 | 6n9oA | 0.16 | 0.14 | 0.88 | 0.88 | MRFsearch | --------------TLAFRVAQLVID-SDLDVLLFPDKKQRTFQ--------------TEDFQGLRAEVETISKELELLDRELCQLLLEGLEGVLRDQLALRALEEALEQGQSVEPLDGPAGAVLECLVLSSGMLVPELAIPVVYLLGALTMLSETQHKLLAEALESQTLLGPLELVGSLLEQSAPWERSTMSLPPGLLGNSAWVLLDECGLELGEPHVCWEPQAQGRMCALYASLALLSGLS- | |||||||||||||
6 | 6ao3A | 0.21 | 0.16 | 0.76 | 2.01 | SPARKS-K | ----------------------------------------------------------AADFQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGLCSGGLDGPAGCILECLVLDSGELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPWQESSVSLPTVLLGNPTWVLLEECGLRLQSPQVHWEPTSLIPTSALYASLFLLSSLGQ | |||||||||||||
7 | 6n9nA | 0.15 | 0.15 | 0.98 | 0.97 | MAPalign | -LQQLRSRGDDLFVVTEVLQTKEEVQIKMVTIPAGSILAFRVAQLLIGSKWDILLVSDEKQFQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGLCSGGQVEPLGPAGCILECLVLELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPWQEQSSVSLWD-EKNPTWVLLEECGLRLQVPQVHWEPTSLIPTSALYASLFLLSS--- | |||||||||||||
8 | 6ao3A | 0.20 | 0.16 | 0.76 | 0.95 | CEthreader | ----------------------------------------------------------AADFQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGGQVEPLDGPAGCILECLVLDSGELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPWEQSSVSLPTVLLGNPTWVLLEECGLRLQSPQVHWEPTSLIPTSALYASLFLLSSLGQ | |||||||||||||
9 | 6n9nA | 0.20 | 0.18 | 0.93 | 1.36 | MUSTER | TKEEQITKMVT-AGSILAFRVAQLLIGSKWDILLVSDEKQRTF-----------------DFQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGGQVEPLDGPAGCILECLVLDSGELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPWQESSVSLPTVLLGDPTWVLLEECGLRLQSPQVHWEPTSLIPTSALYASLFLLSSLGQ | |||||||||||||
10 | 6n9nA | 0.20 | 0.18 | 0.93 | 4.46 | HHsearch | TKEEVTKMVTIPAGSILAFRAQLLI-GSKWDILLVSDEKQRTF-----------------DFQGLYAEVKACSSELESLEMELRQQILVNIGKILQDQPSMEALEASLGQGLCSGPLDGPAGCILECLVLDSGELVPELAAPIFYLLGALAVLSETQQQLLAKALETTVLSKQLELVKHVLEQSTPWQESSVSLPTVLLGDCWDVLLEECGLRLQSPQVHWEPTSLIPTSALYASLFLLSSLGQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |