>PF06273 (535 residues) MSKPWGGIGAWADEAERADEEQAAEATATAADSQSFPSLKEAATAKSSKKKKKMTLSEFT KGAYTAPSSAGLTREQMLQLPTGPRQRSEEEMQPGRLGGGFSSYGGGRSSGPPGRMSRDR DDSDGSWGGGGGGRRSYGGFDDDQRGSNSRVSDLPQVSRADEDDDWGKGKKSLPSFDQGR QGSRYGGLGGGGGGAGSYGGGGGGAGSYGGGGGGAGGGGGFSKADEVDNWAAGKAKSSTF GSGFRDSGPEPDRWARGVLPSGGGVQEERRRLVLEPRKVDAGGSETPTAGKTSKPNPFGA ARPREQVLAEKGLDWKKLDSDIEAKKGQTSRPSSAQSSRPSSAQSNRSESSALNNVENVV KPRPKVNPFGDAKPREVLLEEQGKDWRKIDSELEHRRVDRPETEGERMLKEEIEELRKKL EKEAAIAPESKESHQESDSNHQNLPDLIREKEKDLDLLIRELDDKVRFRPRAVERPGSSA SRAGSYSERPHSRAGSIDESRNVEPMERPRSRGTGDNWPRPVDDRRNFQGSKERG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSKPWGGIGAWADEAERADEEQAAEATATAADSQSFPSLKEAATAKSSKKKKKMTLSEFTKGAYTAPSSAGLTREQMLQLPTGPRQRSEEEMQPGRLGGGFSSYGGGRSSGPPGRMSRDRDDSDGSWGGGGGGRRSYGGFDDDQRGSNSRVSDLPQVSRADEDDDWGKGKKSLPSFDQGRQGSRYGGLGGGGGGAGSYGGGGGGAGSYGGGGGGAGGGGGFSKADEVDNWAAGKAKSSTFGSGFRDSGPEPDRWARGVLPSGGGVQEERRRLVLEPRKVDAGGSETPTAGKTSKPNPFGAARPREQVLAEKGLDWKKLDSDIEAKKGQTSRPSSAQSSRPSSAQSNRSESSALNNVENVVKPRPKVNPFGDAKPREVLLEEQGKDWRKIDSELEHRRVDRPETEGERMLKEEIEELRKKLEKEAAIAPESKESHQESDSNHQNLPDLIREKEKDLDLLIRELDDKVRFRPRAVERPGSSASRAGSYSERPHSRAGSIDESRNVEPMERPRSRGTGDNWPRPVDDRRNFQGSKERG | |||||||||||||||||||
1 | 6fb3A | 0.08 | 0.08 | 0.99 | 1.07 | CEthreader | LLATKSDETGWTTFYDYDHEGRLTNVTRPTGVVTSLHREMEKSITIDIENSNRDDDVTVITNLSSVEASYTVVQDQVRNSYQLCNNGTLRVMYAN--GMSISFHSEPHVLAGTVTPTIGRCNISLPMENGLNSIEWRLRKEQIKGKVTVFGRKLRVHGRNLLSIDYDRNIRTEKIYDDHRKFTLRIIYDQLGRPFLWLPSSGLAAVNVSYFFNGRLAGLQRGAMSERTDIDKQGRIISRMFADGKVWSYTYLEKSMVLLLQSQRQYIFEYDSSDRLHAVTMPSVARHSMSTHTSVGYIRNIYNPPESNASVIFDYSDDGRILKTSFLGTGRQVFYKYGKLSKLSEIVYDSTAVTFGYDETTGVLKM----VNLQSGGFSCTIRYRKIGPLVDKQIYRFSEEGMVNARFDYTYHDNSFRIASIKPIISETPLPVDLYRYDEISGKVEHFGKFGVIYYDINQIITTAVMTLSKHFDTHGRIKEVQYEMFRSLYWMTVQYDSMGRVTKRELKLGPYANTTKYTYDYDGDGQLQSVAVN | |||||||||||||
2 | 5aj3a | 0.64 | 0.06 | 0.09 | 1.02 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 2pffB | 0.23 | 0.12 | 0.50 | 1.12 | MRFsearch | ---------------------------------------------------------------------------------------PDDDYGFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQGSQEQ----------------------------------------------------------------GMGMDLYKTSKAAQDVWNRADNHFK-------------------------------------------------------------------- | |||||||||||||
4 | 5mqfM | 0.08 | 0.07 | 0.94 | 1.29 | SPARKS-K | EYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGEDNGQLDDARVILEKATKVNFKQVDDLASGELELRHEN--YDEALRLLRKATALPARRAEYFDGSEPVQNRVYKVWSMLADLEESLGTFQSTKAVDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIARYGGRKLERARDLFEQALDGCPP-KYAKTLY---LLYAQLEEEWGL--ARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHREMCLRFADMECKLDRARAIYSFCSQICDPRTT------GAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQV----------------- | |||||||||||||
5 | 6b40A | 0.08 | 0.06 | 0.72 | 0.90 | DisCoVER | CMTPYNILKERGFSTL-CPPKQLDAIEKTLMPGTARYSLEPDSVTMPNTKGV-----------RFPYAHAAKTL-EELEDEI----------------VNGLKK-------------------------------LGRDPNDPTL----------VIHTICKD---------------------GADGMGDVSVHKEKSDHLLPDKAL-----RFSFCVLRCSVMTIYEDPNPNSSNRPVLECIGDVGIEKDKIMRVHMS-DGTQRAHYLTFFNSMV-D---EKWDRAHGGLAGAGSKYLCTLCEAVRDEALEKA-GSY--KITRTLKKIVTASKMKYESQEKDTFGVKGYPLLTT-EPWE--R-----GI---------------------------D-ATHTDINMG---NYFKSLIVREMA-QVHSWA-KTANVKKQIVDAESLDLNPTLMM--AGNYARELFLAKFRQLRVYRANWPLMSDEVRYKKAVMANDLKTHYAPCTNYHKVIEHVQELIEHPSGVGSVGALSSE- | |||||||||||||
6 | 1kqgA | 0.06 | 0.04 | 0.60 | 0.67 | DEthreader | ------S-GLCASGASNETGMLT-------------AMTNHWVDIKNANVVMVMGGNAAHPFRWAMEAK-----------------------------IRSGTDITFLSGVLRY-------FAFEDGLF-SGYDAEKRQ-YDKSSWNYQLA-----------------------CVWNLLKEHVSRYTPDVV--------------VCEVLASTSARTTTFLYALGWT-H---A--IR---MIQLLLG----NMG--------MAGGGVNALRGHSNI-------------------T-DLGLLSTSLPG----T-LPSEKQVDLQSYLEANTPYWSNYPKFFVS----------------KWDQTYDVIKYFNMMDEGKVTG--YF--CQ--GF--N-PVAS--FPDKNKVVSCL----------------------------E-NDVDPASIQTEV-RL--CDFHTWTKHAPEQFV-RVT---RGFIRAGIPIHWGFEGVKGYIANTLTP-------NVGDASQTPEYKA--- | |||||||||||||
7 | 5oqlF | 0.08 | 0.06 | 0.79 | 0.95 | CEthreader | LDRIRRYKQAQKKYGRGPRVDIKKLRRTLTNLENKYKTAALKAKEAEILLENQTGFLEPEGELERTYKVRQDEIVKEVAVEVAQKKFELKLTELGPYTCEYSRNGRDLILAGRKGHVATMDWREGKLGCELQLGETVRDARFLHNNQFFAVAQKKYVYIYDHNGVEIHCLRKHVEVSHMEFLPYHFLLATLS-------ISGQLKYQDTSTGQIVAEIATKHGTPVSLTQNPYNAILHIGQQNGTVTLWSPNSTDPLVKL-------LAHRGPVRSLAVDREGRYMVSTGQDNKMCIWDIRNFKEAVNSYFTRAPATSVAISDTGLTAVGWGTHTTIWKGLFNKERPVQVKVDSPYMTWGGQGQVVERVRCPFEDILGIGHNEGFSSIIVPGAGEANYDALEVNPFETKKQRQEGEVKALLNKLQPEMIALDPNFIGNL------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 5ohuA | 0.08 | 0.08 | 0.94 | 0.80 | EigenThreader | ----EQRRLYDQAKAALA----------------KGNSAPYMASRSALRDYPLEPYLAYDELTHRLKSASNEEVERFLTEHGDLPQIGWLKLRWLRLLADRGDYYDPKLNFTELDCLYGQYQLGHGQKAEGYATSERLWLVGKSQPAACDTLFGQLT-----------EEKVWKRLKLAAEARNYSLASHLAQRLPTLGNQGALMVSVAQNPAQLSQTGRFSQRDHATADVVGLGLRRLARQDPEKALSLLDYYSSALPFSSDEKVAIAREIGLSLAKRFDPRLRDNTVTEWRTRLLLRLGRWDEAYALTRKLPWQARSLQLAQPNSKEPIALYQKLAGERDFYGFLAADRLSVPYKLGNRPAHIDFDRDELIAQARLAYDMQWYFPAIRSISQAQYWDDLDIRFLVREAKNRSWIFAITRQESAFMSDARSGVGATGLMQLMPGTAKETSRKFGVNIRLGAAYLSQVHSQFNGNRVLASAAYNAGPGRVRQWLKDTRHIPFDETRQYVQNVLSYAVIYGQKLNAPQPIVDWHER | |||||||||||||
9 | 3dtpB | 0.19 | 0.12 | 0.64 | 0.44 | HHpred | -----NPPGVLALLDEE----------------CWFPSFVEKLIQHAKKSKQLKDKTEFCILHYATYNADPLNDNSLLNQSSDK---FVADLDVDRIVGLFRTVGQLYKEQLTKLMTTLR-NTNPNFVRCIPHEKRAGKLDAHL------VLE--Q-LRCNGVLEGIRCRQGFPVFQE-FRQ-RYEILAANA-------IPK-------------GFMDGKALELDPNLYRIGQSKIFFRTGVLA--HLEEERDAKRQQQAAYLKLRNWQWWRLFTKVK-----------------PLLQSAEREKEMASMKEEFTRLKEALEKSEAR------------------RKE---L---E---------------EKMVSLLQEKN-DLQ-LQVQAEQDNLADQLIKNKIQLEAKVKEMNERLEDEEEM-------NAELTAKKRKLEDECSELKRDIDDLELTLAK----------------------------------------------------------------------- | |||||||||||||
10 | 6f1tX2 | 0.44 | 0.08 | 0.17 | 0.37 | MRFsearch | -----------ERQGHDKDLQLHQSQLELQEVRLSYRQLQGGG----------------------------------------------------------GGGGGGGGGGGGG------------GGGGGGGGGG------------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |