>PF06245 (409 residues) VRPFKAIRPKKELVSKVAALPYDVMDSDEAREMVKDNPYSFLHVDKAEVDLDPSIDLYDK RVYEKARENLYRMIEEGIFIQDEKPYFYIYQQVMDGRVQTGLVVCTSIDDYMNDIIKKHE HTRAEKEQDRINHVDYCDANTGPIFLTYRVKPEIDEIVKGWTVKEPVYDFVSEDGVAHRV WIIDDEATINKLIDLFKNVDYLYIADGHHRCASAVKVGQMRRKENPNYTGEEEFNYFLSV IFPDIDLYIMDYNRVVKDLNGYSTEEFLNKLSEKFIVEEAANAPYRPEAKHTFGMYLEGK WYKLTAKEGTFNPHDPVDRLDVSILQNNLLAPILGIADPRTDKRIDFVGGIRGLKELERR VDSGEMKVAFSMYPTTIEDLMDIADAGKVMPPKSTWFEPKLRSGIFIHK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VRPFKAIRPKKELVSKVAALPYDVMDSDEAREMVKDNPYSFLHVDKAEVDLDPSIDLYDKRVYEKARENLYRMIEEGIFIQDEKPYFYIYQQVMDGRVQTGLVVCTSIDDYMNDIIKKHEHTRAEKEQDRINHVDYCDANTGPIFLTYRVKPEIDEIVKGWTVKEPVYDFVSEDGVAHRVWIIDDEATINKLIDLFKNVDYLYIADGHHRCASAVKVGQMRRKENPNYTGEEEFNYFLSVIFPDIDLYIMDYNRVVKDLNGYSTEEFLNKLSEKFIVEEAANAPYRPEAKHTFGMYLEGKWYKLTAKEGTFNPHDPVDRLDVSILQNNLLAPILGIADPRTDKRIDFVGGIRGLKELERRVDSGEMKVAFSMYPTTIEDLMDIADAGKVMPPKSTWFEPKLRSGIFIHK | |||||||||||||||||||
1 | 5ujdA | 0.13 | 0.07 | 0.52 | 0.67 | DEthreader | ----------M---------------------------------------------------------------------------KQIY----------DTLQLIPV-D----KIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKT------------------------------------------------LFGRYMVIDGVHRFMSLKAL-G--------------CEVIPVQVIQRTQYSIGSWHHKIPGAWCE---TDE-EL-LPWTTEVR------DET-PFITMCDQQT-EHYLYVADLTVD----K-L--DIWKK--VV-----NSYSASCN-VERVPHSA-CL-C--LD-SND-ILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCLNLQVP | |||||||||||||
2 | 5ujdA | 0.12 | 0.06 | 0.52 | 0.67 | DEthreader | ----------M----------------------------------------------------------------------K---QIYD------------TLQLIPV-D----KIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKT------------------------------------------------LFGRYMVIDGVHRFMSLKAL-G--------------CEVIPVQVIQRTQYSIGSWHHKINGAWCE-L-TDE-EL-LPWTTEVR------D-ETPFITMCD-QQTEHYLYVADLTV--D--K-L--DIWKK-VVN----SY-S-AS-CNVERVPHSA-CL-C--LD-SND-ILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCLNLQVP | |||||||||||||
3 | 1vk1A | 0.21 | 0.11 | 0.51 | 2.85 | HHpred | -------------------------------------------------------------------------------------------------VKKVEYVFIELD-----KM-PHEQLVQRELEDFIESVTGSGIFWKPMLLAKIP----------------------------------------------GT-DEYLIVDGHHRWAGLQKLG---------------AKRAPSVILDDEGVKVYTWYPAF-GDV----N-VIERLKEGLEVIEDEKAEE-AEGEIAFALIG-EKSFAIPGGL---------EE------QK-VSKVLDEMDQA--EIEVYY-GLK---EDAKADMEKGEIDYVFI-RAPTKEEVMELVKRGEVFSP-TTRHVLPFIPDKID-- | |||||||||||||
4 | 1vk1A | 0.17 | 0.09 | 0.52 | 1.28 | DisCoVER | -----------------IPVKK-------------------------------------------------------------------V----------E-YVFIEL--D---KMPHEQLVQR-ELEDFIESVTGSGIFWKPMLLAKI-----------------------------------------------PGTDEYLIVDGHHRWAGLQKL---------------GAKRAPSVILDYFGVKVYTWYPAFGDV------NVIERLKAELEVIEDE-KAEAE-GEIAFALIGE-KSFAIPGG---------L--EEQ-----KVS-KVL---DDQAEIELVYYG---LKEDAKADMEKGEIDYVFI-RAPTKEEVMELVKRGEVFSPTTRHVLFIPDKIDVKL- | |||||||||||||
5 | 5ujdA | 0.12 | 0.06 | 0.48 | 0.83 | MRFsearch | --------------------------------------------------------------------------------------------------------LIPVD-----KIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKTL------------------------------------------------FGRYMVIDGVHRFMSLKALG---------------CEVIPVQVIQRTQYSIGSWHHKIPN------GAWCEGLTDLLPWTTEV-----RDETPFITMCDQQTEHYLYVADLT--------VDKLDIW-----KKVVNSYSA--SCNVERVPHS-------ACLCLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIA--------- | |||||||||||||
6 | 5ujdA | 0.12 | 0.06 | 0.52 | 0.86 | SPARKS-K | -----------------------------------------------------------------------------------------------MKQIYDTLQLIPV-----DKIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKT------------------------------------------------LFGRYMVIDGVHRFMSLKAL---------------GCEVIPVQVIQRTQYSIGSWHHKIPNG------AWCEGLTDELPWT-----TEVRDETPFITMCDQQTEHYLYVADLTVD--------KLDIWKKVVNSYSASCN-------VERVPHSACL-------CLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCLNLQVP | |||||||||||||
7 | 1vk1A | 0.21 | 0.11 | 0.52 | 1.29 | MAPalign | ------------------------------------------------------------------------------------------------PVKKVEYVFIEL-----DKM-PHEQLVQRELEDFIESVTGSGIFWKPMLLAKI-----------------------------------------------PGTDEYLIVDGHHRWAGLQKL---------------GAKRAPSVILDYFGVKVYTWYPAFGD-----V-NVIERLKAELEVIEDEKA-EEAEGEIAFALIGE-KSFAIPG------------GLEEQKVS-KVLDEM------DQAEILVYYG---LKEDAKADMEKGEIDYVFI-RAPTKEEVMELVKRGEVFSPTT-RHVLPFIPDKIDVK | |||||||||||||
8 | 5ujdA | 0.11 | 0.06 | 0.53 | 1.46 | CEthreader | -----------------------------------------------------------------------------------------------MKQIYDTLQLIPVDKI-----DLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKTLF------------------------------------------------GRYMVIDGVHRFMSLKAL---------------GCEVIPVQVIQRTQYSIGSWHHKIPN------GAWCEGLTDEELLPWTTEV---RDETPFITMCDQQTEHYLYVADLTVDKLDIWKKVVNSYS-----------------ASCNVERVPHSA-----CLCLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCLNLQVP | |||||||||||||
9 | 5ujdA | 0.12 | 0.06 | 0.51 | 0.80 | MUSTER | ---------------------------------------------------------------------------------------------MKQIY----LQLIPV-----DKIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKTLF------------------------------------------------GRYMVIDGVHRFMSLKALG---------------CEVIPVQVIQRTQYSIGSWHHKIPNGA------WCEGLTDELPWTTEV-----RDETPFITMCDQQTEHYLYVADLTVD--------KLDIWKKVVNSYSASC-------NVERVPHSA-------CLCLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIA---GRCLNL | |||||||||||||
10 | 5ujdA | 0.11 | 0.06 | 0.51 | 4.45 | HHsearch | -----------------------------------------------------------------------------------------------MKQIYDTLQLIPV-----DKIDLHEAFEPSRLEKTKESIAKEQHLRHPVLVVKT-----------------------------------------------LF-GRYMVIDGVHRFMSLKAL---------------GCEVIPVQVIQRTQYSIGSWHHKIPNGA------WCEGLTDLLPWTTEVR-----DETPFITMCDQQTEHYLYVADL--------TVDKLDIWKKVV-----NSYS--ASCNVERVPHS---A----CLCLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIA---GRCLNL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |