Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VASVATANAQQRQLQVGVLECSGGQNVGFVVGSVTDLQCAFRADGRRPEPYVATIHRFGLDLGFTQDTGFAWAVYAPTDRIGRGDLAGSYGGVGANASVGVGFGGNLLVGGSSNAYSLQPLSLQGQTGLNVTAGVADLQLR |
1 | 5uc0A | 0.21 | 0.19 | 0.90 | 1.12 | MRFsearch | | -ASAVEKAFQSFGLPNGYILGEEG-SGAFIGGLTYGEGTLYTKNAGDHKTFWQGP-SLGWDFGGQGSRVLVYNLD------DIQHLYGRYAGVAGSAYVIAGVGFNVLKRE---NIVLVPIRT--GIGARLGVNIGYLKLS |
2 | 5uc0A | 0.22 | 0.18 | 0.81 | 1.03 | MAPalign | | ------------GLPNGYILGEEG--SGAFIGGLTYGEGTLYTKNAGDHKTFWQGPSL--GWDFGGQGSRV-LVYNLD---DIQHLYGRYAGVSAY--VIAGVGFNVLKRE---NIVLVPIRTGI--GARLGVNIGYLKLS |
3 | 5uc0A | 0.23 | 0.21 | 0.91 | 1.31 | CEthreader | | IASAVEKAFQSFGLPNGYILGEEGSGA--FIGGLTYGEGTLYTKNAGDHKTFWQGPSLGWD---FGGQGSRVLVYNLDD---IQHLYGRYAGVAGSAYVIAGVGFNVLKRE---NIVLVPIRT--GIGARLGVNIGYLKLS |
4 | 5uc0A | 0.24 | 0.21 | 0.87 | 1.12 | HHsearch | | IASAVEKAFQSFGLPNGYILGEEGSGGGLTYG-----EGTLYTKNAG--DHKTFWPSLGWDFGGQGSRV---LVYNL---DDIQHLYGRYAGVAGSAYVIAGVGFNVLKR---ENIVLVPIRT--GIGARLGVNIGYLKLS |
5 | 5uc0A | 0.13 | 0.11 | 0.87 | 1.00 | DEthreader | | ESGIAVEKAFQFGLPNGYILGEEGSGAFIG--GLTYGEGTLYTKNAGDHKTFWQGPS-L-GWDFGGQGSRV--LVY-N-LDDIQHLYGRYAGSAYVI----AGVGFNVLKR-ENIVLVPIRTG-----IGRLVNIGYLKLS |
6 | 5uc0A | 0.18 | 0.14 | 0.81 | 1.00 | DEthreader | | --------FQ-FGLPNGYILGEEGSGAFIG--GLTYGEGTLYTKNAGDHKTFWQGPS--LGWDFGQGSRV--LVYN---LDDIQHLYGRYAGSAYVI---AGV-GFNVLKRE--NIVLVPIRTGIG---ARLGNIGYLKLS |
7 | 5uc0A | 0.16 | 0.13 | 0.81 | 1.00 | DEthreader | | -----FQSFG---LPNGYILGEEGSGFIG---GLTYGEGTLYTKNAGDHKTFWQGPS--LGWDFGQGSRV--LVYN-L--DDIQHLYGRYAGSAYVI----AGVGFNVLKRE--NIVLVPIRTGI---GARLVNIGYLKLS |
8 | 5uc0A | 0.23 | 0.20 | 0.86 | 0.52 | HHpred | | -------AFQSFGLPNGYILGEEGSG-AFIGG-LTYGEGTLYTKNAGDHKTFWQGPSLGWDFGGQGSRV---LVYNLD---DIQHLYGRYAGVAGSAYVIAGVGFNVLK---RENIVLVPIRT--GIGARLGVNIGYLKLS |
9 | 5uc0A | 0.19 | 0.17 | 0.91 | 0.71 | DisCoVER | | FFGIAVEKAFQFGLPNGYILGEEGSGAFIGGLT-YGEGT-LYTKNAG--DHKTFWQGPSLGWDFGGQGSRV-LVYNL---DDIQHL-YGRYAGVASAYVIAGVGFNVLKR---ENIVLVPIRTGIGARLGVNIGYLKLSA- |
10 | 2mlhA | 0.10 | 0.08 | 0.79 | 0.50 | MRFsearch | | -------------------------TFHAVSSLGLSAIYDFQIN-DKFKPYIGAVAYGHVRHSIDSTKKTIEVTTVPSYNTDPKTQNDYQSNSIRRVGLGVIAGVGFDIT---PKLTLDAGGRLENTRFKTHEASLGVRYR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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