>PF06126 (497 residues) NYKKYLWGTWFAALITCCGCLSIMFCLLTINLQNTIFLLSNISVYYQLFCTITNIYVQSK KQRFQASPPIGPSIIVGCIAFASWSFSTQSTLSTVCVCIISLLSIITAILSLGGTLRVVK CTIDSGLLCIVMVLVLIFSMGLQIYNNWTHCQFFLPLWTLLLVFFIHIFATDNGPCLKLA ACVFAICGGILKATPAFFCVSHSCLSVIIAGCISCIHIGMTGLFITMKRHWIGSTKGLMS FLLLQGGVLVTLTTTIGILFIKREQDTNNEGSITLLAGCGFLLYCFFCWQSFHKASLSGG FLFLFLAWTCAGCCVKLVLLYTDGWTTGVTSGLICVIVILSTGQAVLVGYLYRESRLVSF NNVTTRLPIYTPHDTPHAHAGRICPDVNHLARRLPPLPSRNVIHSRILSSTTDMALSPVR VCNTEVTTQLEMQQLHSERTVTYASILGDNTPPPTRASACINQSGISNVSNCGVRSLDPP PFQPADEVYEEVLFPTD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NYKKYLWGTWFAALITCCGCLSIMFCLLTINLQNTIFLLSNISVYYQLFCTITNIYVQSKKQRFQASPPIGPSIIVGCIAFASWSFSTQSTLSTVCVCIISLLSIITAILSLGGTLRVVKCTIDSGLLCIVMVLVLIFSMGLQIYNNWTHCQFFLPLWTLLLVFFIHIFATDNGPCLKLAACVFAICGGILKATPAFFCVSHSCLSVIIAGCISCIHIGMTGLFITMKRHWIGSTKGLMSFLLLQGGVLVTLTTTIGILFIKREQDTNNEGSITLLAGCGFLLYCFFCWQSFHKASLSGGFLFLFLAWTCAGCCVKLVLLYTDGWTTGVTSGLICVIVILSTGQAVLVGYLYRESRLVSFNNVTTRLPIYTPHDTPHAHAGRICPDVNHLARRLPPLPSRNVIHSRILSSTTDMALSPVRVCNTEVTTQLEMQQLHSERTVTYASILGDNTPPPTRASACINQSGISNVSNCGVRSLDPPPFQPADEVYEEVLFPTD | |||||||||||||||||||
1 | 4xydA | 0.09 | 0.07 | 0.78 | 0.75 | DisCoVER | -----------------M--KYQSQSIALVYFAVALGLFAIQVSGGLLLGWIY----------------------V------SPNFLSE-ILPFNIVRMLHTNSLIVWLLLGFMGAAYFVIPEESER-EI--------------------------------------------HSPLLAYLQLAIMVLGTLGVVVTYLNEGREFLEQPVWVKMGIVVAALIFMYNISMTVLQGRK-TAITNVLLLGLWGLTLLFLFAFY-N-PSNLALDKMYWW-YVVHLWEGTWELVMASVLAFLMIEKWLYIVATALFSGILGTGHHYFIGTPGWQWIGSIFSALEVVPFFGMMAFAFVMVGRKDHPNKAALLWSLGCATLAFFGAGVWGFLHT-------LHGINYYTHGTQITAAH---GHLAFFGAYVSLNLAIFSYAFPIDPYNQVLNMSFLMAGGMTFMTFVLTFAGTVQTFYWMRFGSGIAVVLGALLFIYAVPRKE- | |||||||||||||
2 | 4ufcA | 0.07 | 0.04 | 0.65 | 0.67 | DEthreader | DLKLWYSASEALPIGNLGAQLNEETFWAG------------TLGSL-YL--EF-PEHQNGSQVDDVTYTRIKANALNFTIAY--VNVQNDQLTVTECQIQV-KT--------------------------------------------R-----LQI--GTEAT-L-------------------YI--SAATNYVVSADESHRTSEYLKRAMIA-KNHIAYYKKQFDRVRLTLAMAALLFHYGRYLLISSSQP-GGQP----------------APWDSKYTININTEMNYW-PAEV-TN-LSETHS--PLFS-MLKDL-VTGAETLWRICGGA-LAQHIWQHYLFT---------------YWLVVVSPEHGPTCTDNAKLPPMQIGQLQEWSHYGYPSNISPYSNPE-------FQAARN-------RMLDGNHAQIGEQSHDG--------------------ARGNFTNIGSTCSNRLFA-TTPIK------ | |||||||||||||
3 | 4xydA | 0.06 | 0.05 | 0.81 | 0.57 | CEthreader | -----MKYQSQSIALVYFAVALGLFAIQVSGGLLLGWIYVSPNFLSEILPFNIVRMLHTNSLIVWLLLGFMGAAYFVIPEESEREIHSPLLAYLQLAIMVLGTLGVVVTYLFNLFEGNWLLGVKMGIVVAALIFMYNISMTVLQGRKTAITNVLLLGLWGLTLLFLFAFYNPWWYVVHLWVEGTWELVMASVLAFLMLKLTGVDREIIEKWLYLIVATALFSGILGTGHHYFWIGTGSIFSALEVVPFFGMMAFAFVMVWKGRKDHPNKAALLWSLGCATLAFFGAGVWGFLHTLHGINYYTHGTQITAAHGGAYVSPILRKRDPYNQVLNMASFWLMAGGMTFMTFVLTFAGTVQTHAQRVQGDYFMDVQDAITIFYWMRFGSGIAVVLGALLFIYAVAVPRKEII------------------------------------------------------------------------------------------ | |||||||||||||
4 | 5mpbS | 0.08 | 0.06 | 0.78 | 0.73 | EigenThreader | -LHHSEKKYAEEDQVQELLKVLNEISK----TTLTLDPRYIWRSLKDLSSLRNQE-----------LLNAETLCFTVNV------LYPD-----SSSFKKNLLKFIVNTEKKTIEV----------TAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLC------YYNLRSLNLINAKLWFYIYLSHETLARSSEE-------INSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNG------------EVDSASDFISKSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN------------------SKSLGFLQQSNKLHCCIQLLMGDIP--------------ELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYDDTYQLCVR--LRSNVIKTGIRIISLTYKKISLRDICLKLNLDSYMVSRAIRDGVIEAKINHE------------DGFIETTELLNI | |||||||||||||
5 | 5tj5A | 0.17 | 0.08 | 0.48 | 0.40 | HHpred | ---------FMFAIMFLMTLAALSLVLNEKKAFTIILLMGVFSMYT------GFLYNG-----------------------TENALLFSNSYKMKLSILMGFIHMTYSFFSLANHLD-IIGNFIPGLLFMQGIFGYLSVCIVYKWAVWVKDG-KPAPG--LLNMLINMFLSPGTIDDELKVQVFLLLMALVCIKPLHFKFDIMHQVHTIEFCLNCVH--------------------TASYLRLWALSLAHAQLS-SVLWIQIAFGF--R----GFVGVFMTVALFAMWFALTCAVLTSAMLHSLLHWVE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6sgwB | 0.07 | 0.04 | 0.60 | 0.58 | MRFsearch | --THIARGAALALIGLILVGTGLSVAHRVITGDLLGQFIVSGIALATVIAALAVRNR-------------------------------SAVLATSLAVTALVPVAAAFALGVPGD------FGAPNVLLAAAGVAAWSLISMAGSPDDRGIAVFTATAVTGVGVLLVAGAASLISSDVIGCALVLLGLIVTVQAAQLSAADLPRRVRVSQAHQTGVIAAGVLLGVAGSVALVSASPWAWYIVVAAAAGAALRA---------------SAACKAWLLGHSYLLAVALLVAFVIQAALWALAALAVLVLVWIVAALNPKIASPDTYSLPMRRMVGFLATGLDASLIPVMALLV------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1pw4A | 0.14 | 0.10 | 0.71 | 0.92 | FFAS-3D | -YRRLRWQIFLGIFFGYAAYFALAMPYLVQGFSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCWPPCGRTMVHWWSQKERGGIVSVWNCAHIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMYVLPNKLLWYIAIANVFVYGILDWSPTYLKEVKHFALDKSSWAYFLYEYGIPGLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-------NPAGNPTVDMICMIVIGFLIYGPVHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVGWDGGFMVMIGGSILAVILLIVVMIGEKR-----------------------------RHEQLLQELVP----------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 7bvcB | 0.11 | 0.10 | 0.93 | 0.78 | SPARKS-K | VSDASIWLPDLICALICWLLLSREVLPRLGPARAAMWAAGLVLLGAWGALITYVLIERAVTSGR------LTPAALAITTAAFTLGI--QPTGLIAVAALLAGWPLIAPLLAAGTVILAVVFADQTIATVLEATRIRTAIGPSLILPTTDGAISVAFVFTAMCLFPSLFMMLRRKHIGVARGPAWRLMGIIFATMFFLMFTPTKWIHHFGLFAAVGGAMAALATVLVSPTVLRSARNRMAFLSLVLFVLAFCFYVSNFGAPFNNSVPKVGGVSAIFFALSAIAALWAFWLHLTVVDRLT------------------------AAPIPVAAGFMVVVMMASMAIGVVRQYTYSNGWLVEPDSNAGFLTPLYGPLGPLGGEDPQGFSPDGVPDRIIAEAIRLNNPQPGTDYDWNRPIKLDEPGINGSTVPLPY-GLDPKRVPVAGTYSTEAQQEPARDETERAAHPLVVITAAGTITGESVANGLTTGQTVDLEYATR | |||||||||||||
9 | 3gi8C | 0.10 | 0.07 | 0.66 | 1.28 | CNFpred | --LWEAVSMAVGVMIGASIFSIFGVGAKIAG----RNLPETFILSGIYALLVAYSYTKLGA--------KIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPNAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAG-SGMIFASAIFFLSYMGFGVITNASEPKKNVPRAIFISILIVYVGVAISAIGNLPIDELIKASENALAVAAKPFGNLGFLLISIGAL------------FSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHY------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 5kf6A | 0.04 | 0.03 | 0.68 | 0.67 | DEthreader | YSLEGALMCLAEALLRIPDT------------------------------LFVNAATWGTSVNLALGMARMMGEQFVTGEIREALKR-SKELEEKGFSYSYD-MLG--E--A-------ATTAAD-AERYYRDYESAIHAIGKASAGRGIYEGPG--ISIKLSALHRYSRADRLELSLDLLGFVIMVRFPQFGEFQYVVGRGKLDRPCRIYAPV--AY--R--------ALPAELNSAGL--S---------------P-D----------------IREAGKSALNAIAEVREAFFLAIFAGSQRPVITSEAKDNIEK-IE-MRGL-QFVPPTEVFGPVLLTIIGAQPFGGKGPLVPPQHSSVHTDPVLLDFAKW--------EAEAARNSYHQLAAAGALVEG-DAE-R---------------IRAVNKA-I---AA-------------LPGPL---LLVQA-------------DAYCLNWLVEEVS----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |