>PF06123 (455 residues) LGIKLGAIALLIVLLLIPLLMIDGLVDERQNYRDEVLRDIARSASYSQQLTGPLVVVPYS RTVRVWRLDKTSQQRVLQEREVRGRLYFLPETFLLDGQMRTELRHRGIYEARLYHADSRV SGSFVLPANYGIGSDLESYRFDAPLLAVGISDVRGIENAPKLKVGDELRDFQPGTQSRFL GNGVHAVLPFKASDREQRFDYSFELSLLGSSRLDITPVGRDSQVNLVSDWPHPSFGGEFL PTERSVSDQGFSARWRTSFFATNLEDQLRACTAPAQADVARAVEAVDPDASRASSAECSE FGQHRFGVALVDPVDQYLKTDRAVKYALLFIVLTFAGFFLFEVLKRLSVHPIQYALVGMA LALFYLLLLSLSEHVGFELAYLISAGACVGLIGFYLCHVLRSLWRGAGFSVGLAGLYGML YALLSAEDYALLMGSLLLFGVLGGVMVLTRRLDWY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LGIKLGAIALLIVLLLIPLLMIDGLVDERQNYRDEVLRDIARSASYSQQLTGPLVVVPYSRTVRVWRLDKTSQQRVLQEREVRGRLYFLPETFLLDGQMRTELRHRGIYEARLYHADSRVSGSFVLPANYGIGSDLESYRFDAPLLAVGISDVRGIENAPKLKVGDELRDFQPGTQSRFLGNGVHAVLPFKASDREQRFDYSFELSLLGSSRLDITPVGRDSQVNLVSDWPHPSFGGEFLPTERSVSDQGFSARWRTSFFATNLEDQLRACTAPAQADVARAVEAVDPDASRASSAECSEFGQHRFGVALVDPVDQYLKTDRAVKYALLFIVLTFAGFFLFEVLKRLSVHPIQYALVGMALALFYLLLLSLSEHVGFELAYLISAGACVGLIGFYLCHVLRSLWRGAGFSVGLAGLYGMLYALLSAEDYALLMGSLLLFGVLGGVMVLTRRLDWY | |||||||||||||||||||
1 | 4u8yA | 0.11 | 0.08 | 0.76 | 1.09 | CNFpred | ----------------IAQVQVQNKLQLAM---PLLPQEVQQQGVSVEKSSSFLMVVGVINTDGTMTQ--------------EDISDYVAANMKDAI-----SRTSGVGDVQLFGSQYAMRIWMNP----------NELN----KFQLTPVDVTAIKAQNAQVAAGQNASIIAQTRLTSTEEFGKILLKVN----GSRVLLRAKIELGGENYDIIAEFNGQPASGLGIKL---------------------ATGANALDTAAAIRAELAKMEP-----------------------------FFPSGLKIVYPYDTTPFVKISIHEVTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL-NTLTMFGMVLAIGLLVDNAIVVVENVERVMAEE-IQGALVGIAMVLSAVFVPMGAIYRQFSITIVSAMALSVLVALILTPALCATM | |||||||||||||
2 | 4yeuA | 0.06 | 0.03 | 0.54 | 0.70 | DisCoVER | ----------------------------------------------------------------------------------------PVDVSVSIFINKI--YGV-NTLEQTYKVDGYIVAQWTGKPRK----------TPDKPLIVENIEFINVVGSPDTG-----------------NKRLML-F-PD----GRVIYNARFLGSFSNQQFVLELNQQLRFSDIQVYTDEWWIASTISDIRYDHLSSVQPNQ-NEFSRI------------------------------------------TVRIDAVRNYF------------------------------------SYIPNIILPMLFILISWTAFWSTYEANVTLVVSTLIAHIAFNILVMTYTGAI-------IFMIYLFYFVAVIEVTVQHASITRASRIAFPVVFLLANIILAFLF- | |||||||||||||
3 | 2xpyA | 0.05 | 0.03 | 0.54 | 0.67 | DEthreader | --------------------------------------------------STLS-N-----------------------------YKDFAVLHTDLNLSVSFE---------KSAISGSVTFQLKKL-H--E--GK-NKSD--E-LHLDT-SY--LD-VQEVHIDGSKADFQIEQRKEP-LGSRLVINNAS-C--NDNFTLNIQFRTTDLQSQLADPSVKSTFTASIESPLPV-V----FSGIRIE-TNIYRFEQKVPIPAY-TNCS---------------ERF----NLNDNT-PAPSLD---------------------------------WVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLV---------------LFLETLTQ--NGH-SN--KKPKDFDWAKFPSFQIFKQEYKLALGGRMKFV----------------------- | |||||||||||||
4 | 4yeuA | 0.10 | 0.07 | 0.69 | 0.44 | CEthreader | -----------------------------------------------------------------------------------------PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKP--------------RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFP--------DGRVIYNARFLGSFSNDM--------DFRLFPFDRQQFVLELEPFSYN------NQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF------------------ | |||||||||||||
5 | 3ebgA1 | 0.09 | 0.03 | 0.34 | 0.77 | EigenThreader | ------------------------------------------------------------------PKIHYRKDYKPS--------GFIINQVTLNINIHDQ-----------ETIVRSVLDMDISKHNVG-----------EDLVFDGV-----GLKINEISINNKKLTYDNE---------FLTIF--SKFVPKSKFAFSSEVIIHPETNYSQCFFIMMAKYDVTVTYPVLLSN----GDKVNEFGGRRFNDPPLKPCYL-------------------------------------------FAVVAGD----------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6exsA2 | 0.12 | 0.04 | 0.31 | 0.30 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQLNLFFGEALF-----QSINPLFILLFAPVISMIWLKMGKKQPSLAIKFSIGTLLAGLSYILIGLVGSVNVILSYVICVIGELCLGNSAAVKLAPKAFNAQMMSVWLLTNASAQAKLIPGQTNYFIFLGTVAIVITLIILVFSPKIT-- | |||||||||||||
7 | 4yeuA | 0.10 | 0.06 | 0.58 | 0.22 | MRFsearch | ---------------------------------------------------------------------------------------------DVSVSIF----INKIYGVNTYKVDGYIVAQWTGKPRKTPGDKPLIVELWVPALEFINVVGSPDTGNKRLMLFGRVIYNA--------RFLGSFSNDMDFRLPFDRQQFVLELEPFSNQQLRFSDIQEIDEWWIRGK------------------ASTHISDIRYDHL-----------------------------------------EFSRITVRIDAVRNYFSYIPNIILPMLFILFISWTAFWSTS-------YEANVTLVVSTLIAHIAFNILVETNLIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLL---------------ANIILAFLFF------- | |||||||||||||
8 | 2j8sA | 0.11 | 0.10 | 0.87 | 0.73 | FFAS-3D | ---PIFAWVIAIIIMLAGGLAILKLPADAKTVQDTVTQVIEQGIDNLMYMSSNSITLTFESGTDADIAQVQQQQGVSVEKSSSSFLMVVGTQEDISDYVAANMKDAGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDV-------------ITAIKAQN---AQVAAGQLGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGS----RVLLRDVAKIELGGENYDIIFNGQ--------PASGLGIKLATGANALDTAAAIRA--------ELAKMEPFFPSG---------------LKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL--- | |||||||||||||
9 | 6v3fA | 0.10 | 0.08 | 0.86 | 0.87 | SPARKS-K | VASWPLTVLALSFIVVIALAAGLTFITDPVELARKEKSFHDEHFGPFFRTNQIFVTAR---------NRSSYKYDSLLLGSKNFSGILSLDFLLLQVWSPEAERNISLQDI------------CYAPLNPY-NTSLSDCCVNSLLQYFQ-NNRTLLMLTANQTLNGQTSLVDW------KDHFLYCANAPLTFKDGTS-------------------LALSCMADYGAPVFPFLAVGGYQ-GTDYSEAEALIITFSLNNYPADDPR--MAQAKLWEEAFLKEMESFQRNTSDK------------FQVAFSAERSLEDEINRTTIQDLPVFAVSYIIVFLYISLALGSLGLGGVIVVLGAVLAAMGFYSYLSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLLGSVAPSMLLCSLSEAICFFLGRTFALTSGLAIILDFLLQVALLSLDSKRQEA | |||||||||||||
10 | 4u95A | 0.11 | 0.09 | 0.82 | 1.09 | CNFpred | IAIIIMLAGGLAILIAPPAVTISASYADAKTVQDTVTQVIEQNM-NLMYMSSNSDSTGTVQITLTFESGT--GVSVEKSSSSFLMVVGVINTDYVAANMKDAISTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVIT-QLNASIIA-STEEFG-KILLKVN---------------QDGSRVLLR---------DVAKIELGGEN--YDIIAEFNGQPASGLGIKL---------------------ATGANALDTAAAIRAELAKMEP-----------------------------FFPSGLKIVYPYDTTPFVKISIHEVTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL-NTLTMFGMVLAIGLLVDDAIVVVENVERVMAEE-IQGALVGIAMVLSAVFVPMGAIYRQFSITIVSAMALSVLVALILTPALCATM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |