>PF06097 (474 residues) MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMGELVNNANGQIRTLLPKAGVKFAYKDY QRGLFSSQVRYILQADSSVAGEKALKEGDEVAFIETIDHGPFPLAQLKRFNLIPSMASVH TELANTPALKKLFEVTKGKSPFTADSRISYSGDTSSAITFIAIDYQQNTTSMKFSGATID ADVSRDMRNVKMSGNSDNIVFTSKNQWDQLEQFSLQGLTLKSDSKMGKFDLSIGDQQLAI KQMGFSIDGKEMATLAGFNLNTQLGETDKDLNGKLTYSLDALKIQGNDFGSGKLAFAFDK LDGQSLKQFTSAYNQQVLQAVQAGENLDPEAYQQQMTEMLLANVPALLKGNPTVSIAPLS WKNAKGESSFNLNIDLMDPAQAKATVEPLLLKSVKKVDATLTIPMAMATELTTQAARLQG YSAEEAQKLAQQQVQGIAAMGQMFKLTTTKDDVISSSFHFADNQVDLNGQKMSL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMGELVNNANGQIRTLLPKAGVKFAYKDYQRGLFSSQVRYILQADSSVAGEKALKEGDEVAFIETIDHGPFPLAQLKRFNLIPSMASVHTELANTPALKKLFEVTKGKSPFTADSRISYSGDTSSAITFIAIDYQQNTTSMKFSGATIDADVSRDMRNVKMSGNSDNIVFTSKNQWDQLEQFSLQGLTLKSDSKMGKFDLSIGDQQLAIKQMGFSIDGKEMATLAGFNLNTQLGETDKDLNGKLTYSLDALKIQGNDFGSGKLAFAFDKLDGQSLKQFTSAYNQQVLQAVQAGENLDPEAYQQQMTEMLLANVPALLKGNPTVSIAPLSWKNAKGESSFNLNIDLMDPAQAKATVEPLLLKSVKKVDATLTIPMAMATELTTQAARLQGYSAEEAQKLAQQQVQGIAAMGQMFKLTTTKDDVISSSFHFADNQVDLNGQKMSL | |||||||||||||||||||
1 | 3efmA | 0.06 | 0.05 | 0.94 | 1.07 | DisCoVER | LSPRETPQ-SVSQIEDQGL-TDTGAILATAPGISVTRSDSNRYSFSARGFTIDNFQFDGLSTDMDAAIYDHVEIVRGATTGSGNPSAAVNFVRKRPLRATFNASVGSWDYVRGDADRIRSRLVAAYSQG-DL--DTRRRTFYGVVSADLTPDTVLTTSVEYHNHSNGWARQDTEATTYFVDLTHRFDWKLRAAYSHTDGRYLMKHV-FSNYDGNLDRDDIHFSLSAPFRHEVALGWMSIDNHSDIQRYMPADDVRTKQTGAYLVGRPLHLIVGDRWSDWKTKQMYRREYRIKNQFTPYAGLTYDINDTYTAYASYTEIFQP-----------QN-ARD-TSGGIL--PPIKSKSYELGLKAAGRLNTSAALFQTRQDNLAQVIPQAS-RA-ASGAKVEGIDLEASGQGASYTHFTTKDASGNPINTNHPRSLFK--LY-TTYTVGGGVDYALVSLMARFDFKLSATLNVNLNL- | |||||||||||||
2 | 6e4vA | 0.08 | 0.08 | 1.00 | 1.10 | CEthreader | VTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEVVRGATGLMTGTGNPSAAINMVRKHATSREFKGDVSAEWNKERYVADLQSPLTEDGKIRARIVGGYQNNDSNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVEFDSKMTGWNSGKRKVDALDLFADGSMFGGSYSKQNNRYFSSWANIFPDEIGSFYNSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYI | |||||||||||||
3 | 6e4vA | 0.04 | 0.03 | 0.61 | 1.03 | EigenThreader | HAT---------------------------------------------SREFKGDVSAEYGSWNKERYVADLQSPLTEDGKNNDSWLDRYRIDVNSPTWGGLPR-----WNEVEFDSKMMYVDVGPG--------PGFDYVGGTGWNSGK---RKVDALDLFADGSYGRQHNLMFGGSYSKQNNDWSPQTTHMKSLYAATRVTD-----PLHLILGARYTNWTL-----TYSMEKNHTTPYAGLVFDINWSTYASYTSIFQPDWMNSRLTTTLAIFRIEQD-NPIPGVDGTVSKGVEFELN---------------------------------------------------WQLTFGYIAEDNEGNVKMFTSYRLPVM----------------PGGGVNWQN------------------------------------------RAEQGSYALVDLFTRTKNQGNV--NNLF | |||||||||||||
4 | 5mz61 | 0.05 | 0.03 | 0.71 | 0.67 | DEthreader | ----------------------------PIDMNSLSKLARITSYYAFQGLYYNIGLASSQF----------NASIWP--Q--SYYVHIGIAFRRCALNVTTAQ-----------TRDSMAMI-N--------------LQTNTYYSIEEAGSENAMRAEMFRMQVMHDVRPRPINFGCVIRW------DSKETFALKVRYLQ---------QRTTILAVLGQLPE-RPTI-------AMNEM-HY-------GHILYWRCRAYGR--------WAESTIRNQS--EKCKLVTMQIAYLPLAHYSQAVELMDKFTFLLDEDEMIKYPGEFWKRRKIVDGRMMTFVDEVQKGAALLM---------------TYLVICPLSQFCWE-RLPIFDEYPYVGRQVSIHS-----SQ--EAMKSQEK---ISAALSQRDAFFAISLLMGCGSVRTIKTAILAPLIQLSEAMYGLPVVAK- | |||||||||||||
5 | 3efmA | 0.07 | 0.07 | 1.00 | 1.08 | CEthreader | TEAMSTATGLTLSPRETPQSVSVVTRQQIEDQGLTDTGAILATAPGISVTRSDSNRYSFSARGFTIDNFQFDGLVSPILSQWNYGSTDMDAAIYDHVEIVRGATGLMTGSGNPSAAVNFVRKRPLREFAVPITEDGRIRSRLVAAYSQGDLDTRRRTFYGVVSADLTPDTVLTTSVEYQHNHSNGPWARQDTEATTYFVDLTHRFTNDWKLRAAYSHTDGRYLMKHVFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMSIDNDDVRTKQTGAYLVGRFALAEPLHLIVGDRWSDWKTKQMYFGSRREYRIKNQFTPYAGLTYDINDTYTFQPQNARDTSGGILPPIKSKSYELGLKAAYLEGRLNTSAALFQTRQDNLAQVIPGSSIPGFPNMQASRAASGAKVEGIDLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTYRLPGALHVDWQSRMQDS | |||||||||||||
6 | 3efmA | 0.07 | 0.04 | 0.62 | 1.02 | EigenThreader | ATGLMTGSG---------------------------------------NPSAAVNFVRKVPITEFYGVVSADLTP-------------DTVLTTSVEYQGPWAR------QDTEATTYFVDLTHRFT-----------NDWALGWMSYAMTLSPTGAYLVGRFALAEPLHLIVGDR-WSDWKTF---GRIKNQFTPYAGLTYDIN---DTYTAYASYTEIFQPQNARDTSGGIIKSKSYELGLKAAYLEGRLNTSAALFQTRQDNNMQASRAASVEGIDLEASGQ--ILPDWNIGASYTHASG--------------------NPINTN--------------------HPRSLFKLYTTYRLPGALGGGVDWQSRMQDS--------------YALVSLMARFK-----------------------------------------------LSATLNVNNLRNVMLN--LRY- | |||||||||||||
7 | 5kpeA | 0.09 | 0.02 | 0.19 | 0.30 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKQAAIAIFQLW----K------NPTDPEALSPDVLDQVREHARELQKQGIHFEVKRVEVTTDGNTVNVTVELEETTGGTTTNTT----------YELRFEVDGDTIR----------------------------------------------------------------- | |||||||||||||
8 | 4alzA | 0.11 | 0.03 | 0.28 | 0.50 | MRFsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPWLLTGYIQDNHARLSLQNFLESHGIPFR------LELRSMEELRQGAEFILQRLG--YHGIEVS---LAPQAGWLQLNGEVS---EEIQKQKIDSLLQAEVLGVENKVRIAPNQRKRLDALLEQFGL--------------------------------DSDFTVNVKGELIELRGQ---- | |||||||||||||
9 | 1bp1A | 0.09 | 0.06 | 0.66 | 0.92 | FFAS-3D | --------------------------------------------------------------------------------------------VVVRISQKGLDYASQQ-------------------GTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIR----EFQLPSSQISMV---PNVGLKFSISNANIKISGK------WKAQKRFLKMS------------GNFDLSIEGMSIS-----------ADLKLGSNPTSGKPT---------ITCSSCSSHINSVHVHIKSKVGWLIQLFHKKIESALRNKM-------NSQVCEKVTNSVSSKLQPYFQTLPMTKIDSVAGATTAETLDVQMKGEFNHHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEPNMKIQIHVSASTPHLSVQPTGLTF | |||||||||||||
10 | 2qv3A | 0.10 | 0.08 | 0.75 | 0.79 | SPARKS-K | --------------------------------------------------TVVNIDRINTKAASLTTNAHLNIGKGGVNLSNQASGRTLLVENLTNITVGPLRVNNQVGGGSS---ANFEFKAGVD----------TKNGTATFNNDISLGRFVNLKVDAHTANFKGGFNTLDFSGVTNKVNINKASTNVAVNFNINELIVTNGVSVGEYTHFSEDINTVRLETGTRSIFKFKSGEKLVIDEFYYDARNIKNVEITRLMFNNLTLGQNAVMDYFSNLTIQNYLVRGGKVATLNVAAAMMDID---------------------SATGF---------------------YKPLIKINSAQLIKNTEHVLLKIGYGNVSTGISNVNLEEQFKERLNRMDTCVVRNTDDIKACGMAIG----------NQSMVNNPDNYKYLIGKAGIKTANGSKISVYYLGNNGG---NTTNLPT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |