>PF06082 (659 residues) SQMDQGGVGLLQTPTGRMAREGEFSMNYRDNDQYRFYSLNLQLFPWLESTIRYTDVRTRK YSSVESFSGDQTYKDKGVDFKLRLLKESYWLPELSVGVRDFGGTGLFDSEFVAASKAWGP FDFSLGLGWGYLGSRGNVTNPFCKVKDSYCYRDNSNRRAGNFNTDSFFHGPSAVFGGVEY QTPWQPLRLKVEYEGNNYQDDFAGTLDQKSPVNVGAIYRVADWADVNVSYERGNTFMFGV TLRTNFNDLRQQHIDEKKPDYAPNPQTEILQHQVVAQQLTDMQSNAGYTAPHIQVKGHTM YMTGQQYKYRDSAEGVDRANRIMVNNLPENIDTLKVTEMRENMPMVTTETNVRSLQDTLQ GYPLGHEKPLIQRRVEPDVPKTAEQGYYIDRSRLQLSWSPVLNQSFGGPESFYLYQIGVE GTANYWLTNHWALSGSLFGNIVNNYDKFNYTDPPSDSHLPRVRTHIRSYVQNDVYISNLQ TTYIDRLGDGWYGQLYGGYLEMMYGGVGGELLYRPLDSNWAVGVDGNYVKQRDWDNMMKF TDYKVATGNLTGYWQPTFLKGVLVKASVGQYLAKDKGVTFDLSKRFDSGITAGAYATFTN VSKEEYGEGSFTKGFYLSIPLDVLTVTPNRTRAQFNWTPLTRDGGQMVGRKYYLYGLTD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SQMDQGGVGLLQTPTGRMAREGEFSMNYRDNDQYRFYSLNLQLFPWLESTIRYTDVRTRKYSSVESFSGDQTYKDKGVDFKLRLLKESYWLPELSVGVRDFGGTGLFDSEFVAASKAWGPFDFSLGLGWGYLGSRGNVTNPFCKVKDSYCYRDNSNRRAGNFNTDSFFHGPSAVFGGVEYQTPWQPLRLKVEYEGNNYQDDFAGTLDQKSPVNVGAIYRVADWADVNVSYERGNTFMFGVTLRTNFNDLRQQHIDEKKPDYAPNPQTEILQHQVVAQQLTDMQSNAGYTAPHIQVKGHTMYMTGQQYKYRDSAEGVDRANRIMVNNLPENIDTLKVTEMRENMPMVTTETNVRSLQDTLQGYPLGHEKPLIQRRVEPDVPKTAEQGYYIDRSRLQLSWSPVLNQSFGGPESFYLYQIGVEGTANYWLTNHWALSGSLFGNIVNNYDKFNYTDPPSDSHLPRVRTHIRSYVQNDVYISNLQTTYIDRLGDGWYGQLYGGYLEMMYGGVGGELLYRPLDSNWAVGVDGNYVKQRDWDNMMKFTDYKVATGNLTGYWQPTFLKGVLVKASVGQYLAKDKGVTFDLSKRFDSGITAGAYATFTNVSKEEYGEGSFTKGFYLSIPLDVLTVTPNRTRAQFNWTPLTRDGGQMVGRKYYLYGLTD | |||||||||||||||||||
1 | 5ivaA | 0.08 | 0.05 | 0.69 | 1.32 | EigenThreader | ------------IDDRRQSGFL----------------------PPSFSST-----------SDTG----------FTLVTPYYFNLAPNYATLYPRYMAK-----RGMMLEGEFRYLTSSEGIVNLNDKDDHREGF-----------------------------PDYSKDRLYGLKNTTGLDSRWLAEVDYTDPYYFQDLDTDLGVGSTTYVNTLTYRGDTFTNAQAYQLATDRLPQITFDG--FLPYNPGGMDLDENIDDGSIRGKR-PDASLQGLARA-------TGDRMHTRSWKYDLDL----DSQGKTDLNKRDE------SFDSNQDRSLPLV--KVDSGLY----------------FDRDTTFA--------------GTPFRQTLEPRA-MYLYVPYRIGDANQLSLGVTSRFIEENG-FERASISAGQIRDRRVQLPGLTELNLDPSGLDNDSW-----RSPYAFAGQYRFN----RDWRINSDFNWNTSRTESGSAIFHYQPEVDPGKVVNVGYRYRADASSRGTNENDIIKQHDFSVIWPLV---PQWSVLARWQYDYNKNRTLEAFGGFEYCWKLRLINRYWDAFL------------VGIFLQIVLK------------------------------------ | |||||||||||||
2 | 3pjqA | 0.11 | 0.07 | 0.71 | 1.12 | CNFpred | ----------------------FRLPALVNV-DGVMVAIADARYSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIVKGN--KLYVLVGSYNSS---ARDWDILLAVGEVTKSTITASIKWGS----------PVSLKEFFPAEME------GMHTNQFLG-----GAGVAIVASNGNLVYPVQVTNK------------KQVFSKIFYSEDAFGCSEPVALEWEGKLIINTRVDY----------------------------------------------------RRRLVYESSDMGWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLN----------------FKGRWL---------------RDRLNLWLTIYNVGQVSIGDENSAHSSVLYKDDKLYCLHEINSNEVYSLVFARLV-----------GELRIIKSVLQSWKNWDSHLSSICTPGPAVTTVGLVGFLSHSAWEDAYRCVNASTANAE-PNGLKFAGALWPVSQQGQNQRYHFANHA-FTLVASVTIHE-VPKGASPLLGASLDS--GGKKLLGLSYDKRHQWQPIYGSTP-VTPTGSWE----GKRYHVVLTMAN-------KIGSVYID--------------------- | |||||||||||||
3 | 2odjB | 0.06 | 0.03 | 0.52 | 0.58 | DisCoVER | -------GFVSDQAEAKG---------------------FIED--SSLDLLLRNYY--FNRD----GKDRVDWTQGFLTTYESGF-TQGTVGFGVDAFGYLGLKLDYSRAGGAVKVR-ISKTLKWGEQPTAPVFAA---------------GG----RLF------PQ---TATGFQLQSSE-FEGLDLEAGHFTEELYAT-YAGETAKSADFIGGRYAITNLSASLYGAELEIYRQYYLNSNYTI---------------------------------------------------------------------------------------------PLDQ-------------------------------------------------SLGFDFNIYRT-NDGKAKAGDISNTTWSLAAAYT-LDAHTFTLAYQKVHGDQP--F-DYIGFGGDSIFQYSDFN--GP--GEKSWQARYDLNLASYGVPGLTFVRYINGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANAD-QGEGDQNEFRLIVDYPL---------------------------SI-LH-----HHHH--------------------H----------------------------H-------------- | |||||||||||||
4 | 5fokA | 0.08 | 0.07 | 0.93 | 0.67 | CEthreader | -----DETTYNVDRSASKKYTAPLLDTPKTVTVIPQQVIKDTGALTLADALRTTITFGADRPFIRGFNAESDTFLDGMRDVASQTREVFNVEQIEVSSAYTGAGSTGGSLNLISKTAKQDNFTDAGFTWGSD-------------------------------------QTRRTTLDVNRMIGDNAAFRLNLMKHDAHVAGRDEVSVSRWGVAPTVTFGFDTPTRATLSYYHLSTDDLTNVNRSKANPSKPASVDRDNFYGLKDRDYRKSTTDSGTFRIEHDLNDNLTLSNSTRLVRTTLDYIVSNPDDSRGNVANGYVYRSAKSRNSTSKGWVNQTDLKANFETGFIKHTLVEFSYEDVHNRPYAITSGGGAGNTCNARLLASGDCTSLNRPTPGDNWTGSITDGLAYTDTDTKTSAAYVFDTLKLSEQWELNLGLRYDDFDTKSSGYQTAGRNGPAGYFKRE-------NNSHFWNYQTGLVYKPAPNGSIYLAWSTSSNPRNNLELGTKWAFFDDALSLNAALFRTDKTNARLQVLDGEQRVQGVELGFNGKLTEKWKVFGGYTYLDSEIRKSTVKLWTTYDLLQNFTIGGGTTYVKQYGNTANSTYIPSYWRYDAMASYKVSKNVDLQLNVQNLTDKRYFDQVYSTHMAHVAPGR | |||||||||||||
5 | 5ixmA | 0.06 | 0.04 | 0.65 | 1.12 | EigenThreader | ---SMSGFLIPSNNPYYWNIAPATITPHYMERRGLQWQNEFRYAPGSGTMALDWLPIYTGPD----GTDKNATRW--LYYWGHSGVMDQVWRFNINYTRVSDPATSQYGSIFTAGYANENWNATLSSKQTAAGNSNA---------------------------------YRAQNYYKNDVG---PFDMHVYGSVNPTN-------------PEPTVNLPSWGSINTEAKL----LATHYQQDIPASFADNASNPKLK-------------------------------------------------------------------------DSVNRVLPQFKVDGKV----------------------VFDRSMDWATGF----------TQTLEPRAQ-YLYVPYRNQDDSANQVSTGLTSRIYDDARVNVSVGQIYYFSRS------------RTGNTEN--------ATGSLVWAGDTFWRINDQLGLKGGAQYDTRLGSLTAIMEYRKDADR-----MIQLNYRYASPKVYNPDYQQGISQVGTTASWPIA---DRWAIVGAYYYDTKAKASQLVGLQYNTCCWAVNLGYERKA-----------QGQTKIGFNI------EGTAQMLN----SGILPYQSAF----------- | |||||||||||||
6 | 2y0kA | 0.13 | 0.04 | 0.33 | 0.45 | HHpred | -------GAHLDRNKLNSSSDQVFSAIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIY---------RQTFAGL--VHTLDL-G-RSLKSDLRFARASEDGGRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAG--SDPYLV------NF--IQIGDFNVDERSWQLRYDYDFGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQKNLGVKWRNATVDLDENRLILSYSLAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3efmA | 0.11 | 0.07 | 0.59 | 0.38 | MRFsearch | --------------------SAAVNFVRKRPEFAATFNASVGSWDYVRGDADISVPI---------------TEDGRIRSR------------------------------LVAAYSQGDLDTRR----------------------------------------------RTFYGVVSADLTDTVLTTSVEYQHNHRQDTE------ATTYFVDLTHRFTNDWKLRAAYSHTDGRYLMKHVFSN-------------------------------------------YDGNLDRDDIHFSLSAPFEAF---------------------GLRHEVAL---GWMSIDNHSDIQRYAMTL-----SPADDVRTKQT-------------GAYLVGRFALAEPLHLIVGDRWSRIKNQFTPYAGLTYDINDTYTAYASYTEIFQP-----QNARDTSGGILP------------PIKSKSYELGLKAAYLGRLNTSAALFQTRAKVEGIDLEASGQIL-PDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTYRLPALHRLTVGGGVDWQSDSYALVSLMARFDFNKKLSATLNVN-------------NLRNVMLNLRAQ------------------------------------- | |||||||||||||
8 | 6e4vA | 0.10 | 0.08 | 0.86 | 0.80 | FFAS-3D | SAGTKMQMTQRDIPQSTIVSQQRMEISKSQADSDRALYYSRGF------QIDNYMVDGIPTYFESRWNLGDALSDMALFERVE----------VVRGATGMTGTGNPSAAINMVRKHAGDVSAEYG-SWNKERYVADLQSPLTE-DGKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTLSAGYEYQRIDVNSPTWGGLPRWNTVFMTLKQQFADTWQATLNATHSEVEFDSKMMYVDA------------YVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELFGRQHNL-----------------MFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDW----SPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDSNGETAYKAVD--GTVSKGVEFELNGAITDN-WQLTFGATRYIAEDNEGNAVNPNLPRTTVKMFTSYRLPVMPELTVGGGV-NWQNRVYTVDLFTRYQVTKNFSLQGNVNNFDKTYDTNVEGSIVYGFSITGTYQF------------------------------------ | |||||||||||||
9 | 6nyfA | 0.12 | 0.10 | 0.83 | 0.96 | SPARKS-K | --------------LLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLSKIDGGWDWGNAATH-------YWIKGGQWN--KLEVDMKDAVGTYKLSGNFTGG-----DLDVNMQKATLRLGQFNDFNAKNILIDNFLEINSGAGRKASTLQASEGITAEISLYDGATLNLASNSVKLNVWMGRLQYVGAYLAPSKVTGEVNFHLTVGDHNAAQAGIIKTHIGTLDLGLNIIAP---PEGGYKQKTEVQPTQVIDGPFA-----------GGKDTVVNIDRINTKADKASLTTNAAHLNIGKGGVNL-------SNQASGRTLLVENL-----TGNITVDG------------------PLRVNNQVGGYALAGSSA----NFEFKAGVGTATFNNDISLGRFVNLKVDAHT-ANFK---------GIDTGGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINELIVKTNGV-SVGEYTHFSEDIGSQ--SRINTVRLETGTRSIFSGGVKF-----------KSGEKLVIDEFYYSNYFDARNIKNVEIKFASST--PENPWGTSKL--MF-NNLTLGDYSQFSNLT----IQGDFNQGINYLVKVATL---NVGNAAAMMYKPLIKNSAQDLIKNTEHVLLKA | |||||||||||||
10 | 5odwA | 0.11 | 0.08 | 0.69 | 1.10 | CNFpred | ------LGATINLIRKKPTFKGHVELGAGSW-DNYRSELDVSGPVRGRAVAAYQDKHSF-------------MDHYERKTSVYYG---------ILEFDL-------PDTMLTVGADYQDNDPKGSGWSGSFPL--DSQGNRNDVSRSFNNGA------KWSSWEQYT---RTVFANLEHNFA-NGWVGKVQLDHK------------INGYHAPLGAIMGDSAKIVAQKYTG-SNSLDIYLTGPFQ---------------------------------------REHELVVGTSASFSHWEGKSYWYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVT----------------------------------------DDLNLFLGGRVVDYRVTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFM--PQDSWYRDS-SNKLLEPD------------EGQNYEIGIKGEY-LAYFEIHEENRAEE-TKGYEAEISGELA-PGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKALDKLTVGGGARWQGKSWQMVYNWEKFSQEDYWLVDLMARYQI-----------TDKLSASVNVNNV----------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |