Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | RKYAPATQRNREPILEVLLQVLPASGTILEIASGTGEHAIFFAPRLKPRKWLPSDPNPELRASITAWIAQFPSDNLYPPVELDASQPIWSVERDAILQDAPIAAIVNINMIHISPWSACLGLLAGAGRILPPGGILYLYGPYKQGGEHTAPSNAAFDESLRSQNPEWGVRNLEDVIAAAKQQNLQLHKTYQMPANNLSVVFQR |
1 | 2vdwA | 0.08 | 0.08 | 0.99 | 1.33 | DEthreader | | NRTRGLGILSNYVKTLLISMYCSKKRKVLAIDFGNGAD-LEKYFYGEIALLVATDPDADAIARGNERYNKLNKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPHYATVMNNLSELTASGGKVLITTMDGDKLSKLTKFMSVEKIVVYTPMT-EYIIKKNDIVRVFNEYGFVLVDNVDFALYYVVYVFSK |
2 | 4qvgA2 | 0.13 | 0.12 | 0.94 | 2.44 | HHpred | | --FYRGMHAWSQLSNPVLLAQPTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDR-PGALEVARKTIAEAGLEERVRTHAADIFTDSYP--------A-GHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTLPFRHSTIHRWADCESWLREAGFTDVGRTAPPTPHGVVSGSR |
3 | 4qvgA2 | 0.12 | 0.11 | 0.92 | 0.54 | DisCoVER | | APAADYQ-LSNPVLLAQ---DFTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDRP-GALEVARKTIAEAGLERVR-THAADIFDS-Y-------P--AGHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTTLPRHSTIHRWADCESWLREAGFTDVGRTAPWTPHGVVSGS- |
4 | 3ocjA | 0.13 | 0.12 | 0.94 | 0.38 | MRFsearch | | ---VLATRERHGHFRRALQRHLRPGCVVASVPCGWSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL---------DTREGYDLLTSNGLNIYEPDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDPHDLQLQQLVFTRLRWNALRTHAQTRAQLEEAGFTDLRFEDDRRLFPTVIARK |
5 | 3dtnA | 0.12 | 0.11 | 0.94 | 1.29 | SPARKS-K | | GKYDEQRRKFFDDFYGVSVSIATENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKYIEADYSKYDF---------EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIELNKTIWRQYVENSGYLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK |
6 | 6f5zA | 0.14 | 0.12 | 0.88 | 0.39 | MAPalign | | --MEDRHWHTAKHALARM--PVEEGDTVVDLGTGSGYALRALRDTKGIGRGFGLDGSPEMVQNARAYT----DTDDLSFLVGDFDDLP--------FDDDSVDHVWSMEAFYYA--ADPHHTLEEIARILKPGGTFYCAVNYYEE-------NVHSHEWQEHISIDMTRWSHAEYREAFRDAGLHVAEQDSITFGTLLTVGVA |
7 | 1tw2B | 0.14 | 0.13 | 0.93 | 0.31 | CEthreader | | SLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLE-MAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP----------RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSDLSLLVLAP |
8 | 4qvgA2 | 0.13 | 0.12 | 0.95 | 1.04 | MUSTER | | ELFYRGMHAWSQLSNPVLLAQPTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDR-PGALEVARKTIAEAGLEERVRTHAADIFTDSYP---------AGHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTTLPFRHSIHRWADCESWLREAGFTDVGRTAPWTPHGVVSGSR |
9 | 4qvgA2 | 0.13 | 0.12 | 0.95 | 0.70 | HHsearch | | ELFYRGMHAWSQLSNPVLLAQPTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDR-PGALEVARKTIAEAGLEERVRTHAADIFTDSYP--------A-GHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTTPFRHSTIHRWADCESWLREAGFTDVGRTAPPTPHGVVSGSR |
10 | 3dtnA | 0.10 | 0.10 | 0.94 | 1.71 | FFAS-3D | | RKFDAVSGKCFDDFYGVSVSIATENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYI------------EADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYIAAGYLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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