>PF06061 (330 residues) RDLRMHFMSDLERDIMKATLKFSTNYILGYINSKDMRMTGKFASRPVKYKKTMEHMSDSR CTTCNYKFKDNTREWFLYVVVHIEKPLDDPGRIDICCQKCYLYHNVPKTSYEIYPSINLV DLSYLARERFFYQYIFPVSLDYTTEVKELRIDDHNCKVFEIIRRIIRNHKEPNERIQTID LSTTGGLVLRETYTNIVLQRYRSMCTRPDVVDDVNCFILQEPSEMMAALQDNRFSGIKGT VFATVKVKKFTQVLDGAITFPLKPTTNNYCKLCKKTKLYYKNPVLYCTKCGFTNVYHFPE YSKCMYYFEAIKSFEMHNEMIIYYDLKMYK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RDLRMHFMSDLERDIMKATLKFSTNYILGYINSKDMRMTGKFASRPVKYKKTMEHMSDSRCTTCNYKFKDNTREWFLYVVVHIEKPLDDPGRIDICCQKCYLYHNVPKTSYEIYPSINLVDLSYLARERFFYQYIFPVSLDYTTEVKELRIDDHNCKVFEIIRRIIRNHKEPNERIQTIDLSTTGGLVLRETYTNIVLQRYRSMCTRPDVVDDVNCFILQEPSEMMAALQDNRFSGIKGTVFATVKVKKFTQVLDGAITFPLKPTTNNYCKLCKKTKLYYKNPVLYCTKCGFTNVYHFPEYSKCMYYFEAIKSFEMHNEMIIYYDLKMYK | |||||||||||||||||||
1 | 2gsyR | 0.08 | 0.07 | 0.90 | 0.72 | DisCoVER | RSLLMPTPSIEKHTLRSETSTTVGDTGSGLIVFFPGFPGSIVGAHYTLQGLLTACRLVSRSLTVR--SSTLALNGTINAVTFQGSLSELATNDKIGNV-LV--G--E-GVTVLSLTVSSDR-PRVYTITAADDYQFSSQYQPGGVTITLSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFVITRAVAANNGL----------------TTGTDNLMPFNLV--IPTNEITQPITSIKLEIVTSKGQDQMSWSARGSLAV---TI--HGGNYPGALRPVTLVAYTVAGVSNFELIPLVTEYGRFDPGAMNYDRLGIKTVWPTREY- | |||||||||||||
2 | 3weuA | 0.06 | 0.04 | 0.66 | 0.67 | DEthreader | LNQVFKVEWT-VH--LA-NKKAAWYEFRELNGNRSYSARGVPWRNASKAERSLIDLGPRSVS-ATVEISINSFESL---------------------VLGG-YGFAYDDISDGSV---------------W-VVGDPEI-----LSDTC---------------FDVGVRNFDLVPDM--------------YVANFILIQRSQSGFFSFQ---DYRDGSKRMKYYNYFRSLPLMMNKFLALDTQYPVSDMASINCEMTWS----------IY--K---DAYQIKH------FD-NGLTREECEGKRACPWA---------W-QSPWSF- | |||||||||||||
3 | 4d51A | 0.06 | 0.05 | 0.89 | 0.57 | CEthreader | ------------------------------------ASDQRGYKPGGHVGTSVEYEDKVTRGFNNTDKKEKTITNEVFNFFYNNPQWNFMGFYSFKIENREQKEPGYYENEDGIKQLFSLNKGHDLGNGWATGLIYELEYTRSKVYSPDVSGLRKNLAEHSIRPYLNDYNMGFYSNLEYLLSKEDRNAWGKRQEQGYSALFKPYKRFGNWEVGVEFYYQIKTNDEKQPDGTINEKSDFNERYIEPIVQYSGTLYTRVRVGKNETKNTDRSGGGNAGINYFKDIRKATVGYEQSIGESWVAKAEYEYANEVEKKSREARNKSELTQHTFYA | |||||||||||||
4 | 4obyA | 0.05 | 0.05 | 0.85 | 0.50 | EigenThreader | MNIQALLSEKVRQAMIAAGMMAVAKKLGMAPRQLAEQVLTHLDLNGGPGPAFLAEHVQQALASDRLGVATPEKQTIVVDYSAPNVAKEMHSTIIGDAAVRTLEFLGHKVIRANHVGDWGQNQITYDRLNV-----TLTRDDVM----------GESLYNPMLPGIVADLKAKGLAV--------ESE------GATVVFLD-----EFKNKEGEPMIIQKKDGGTTDIACAKYRYETLHA--------------DRVLYYIDQHLMQAWAIVRKAGYVPESVPLEHHMFDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFTAPYMQY | |||||||||||||
5 | 3avrA1 | 0.15 | 0.05 | 0.30 | 0.33 | HHpred | ---NIKVSDPKLFEMIKYCLLQLREALIGK-----------E--I--IWHGRTKEEPAHYCSICEVEV-----FDLLFVT-NES---NSRKTYIVHCQDCARKTSENFVVLEQYK---MEDLMQVYDQ-FT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3vthA | 0.12 | 0.05 | 0.45 | 0.67 | MRFsearch | ----------------------------------------------------------------------------------------------------------------------------------------------QIQARQINIFGIVVGFRPFVFNIAQKY------NLKGIVYNNSSGLYIEVEG--------------------------EEKDIEAFIREIKENPPSLSVIDEIQVREVEVKKDFKIVGSKESPDMGVCEDCLRELRRYRYPFINCTNCGPR----FSIIEVFPMCEKCSREYHDCGPSLSFVGE---- | |||||||||||||
7 | 3avrA1 | 0.09 | 0.03 | 0.33 | 0.46 | FFAS-3D | ---NIKVSDPKLFEMIKYCL--LRTLKQCQTLREALIAAG----KEIIWHGRTKEEPAHYCSICEV---------EVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 4r04A | 0.07 | 0.06 | 0.89 | 0.58 | SPARKS-K | AKSYSLLLSGDKNYLISNLSNTIEKINTLGLDSKNIAYNYTD---------ESNNKYFGAISKTSQKYKKDSKNILEFYNFNSKDFI--AEDINVFMKD-------DINTITGKYYVDNN-------TDKSIDFSISLVSKNQVKVNGLYLNESNSDMNLFLDNIFWKLGFENINFVYVEFICDNNKKSTIFSGNNVVVEPIYNPDTGEDISTSLDFSYEPLYGIDRYINKVLIAPDLYTSLININTNYYSEYYPEIIVLNPNTFHKKNLDSSSFEYKTEGSDFILVRKIRIKGFNKFKDIKKLSL-GYIMSNFKSFNS----------- | |||||||||||||
9 | 3lx1A | 0.10 | 0.06 | 0.62 | 0.83 | CNFpred | ----------EFADLIATASNLI---------------------------------------------------DEAAFKFTE-------EGISMRAMD------SRVVLIDLNLPE-----------SIFSKYEVE-------EPETIGIN------MDQFKKILKRGK--AKDTLILRKGDENFLEITFEKRTFRLPLID-LELELPELPFTAKVVLLG-EVLKEGIKDASLVSDAIKFIAKENEFTMKAEGEVEIRLTLEDEGLLDLEVEE------ETKSAYGI----------------RYLSDMVKGIGKADEVILRFGNEMPL | |||||||||||||
10 | 3cmmC | 0.09 | 0.06 | 0.67 | 0.67 | DEthreader | AEIDLMQSNVIVEIAKNVTQTD-ETR-G-LFG--NTFVDFVFSFDAAQLHLGVLIELESLPDPKNFPRNETQDNQIQIANSKVFLV------MLNWLLGLG-SGSDGYIVV----NLNRQFLKSAALDRLLESGTLGTK-------------------------------------ID------------HTIAWASLGYSNVMYFVVLESIDSAEFKFDIKTPLEFDI--KSVIDHM---EFTADRQKFIIPATTVTGVNL-L----YKLIDNK--TDIEQ-YKN-------------------GFVNFFGFS------EPI------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |