>PF06054 (357 residues) FTARNNIGETFTITKMNVERIKQEERLFCKSCASPVMIKAGQIKIPHFAHEKTMKCAFAS EGESEEHLAAKKQIMAWFCYQRIPVEIESYFPEINRQADIFVNGKTVIEFQRSSISISEM IQRTMDYLSIGLEVHWILGQVVKKEKGRICLSAFQQAFIQSDKKLGYHFWHYSAKREICT LYYHLTFEKGNRFFASEMKFSMKSPLREWNKKLARIISRHAYIKRDREIERQKICFYYAK YKKHGQFMQKLFNAGYYLHYLPKEIGVDVEEQFLVLTPAVEWQFDLWEKFFKGLEKGDTF SVESFLESFKSVVSQILTIWLSPNESLKLGKSYLSYLIGEGVLSTIPDNRYRVKRKM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FTARNNIGETFTITKMNVERIKQEERLFCKSCASPVMIKAGQIKIPHFAHEKTMKCAFASEGESEEHLAAKKQIMAWFCYQRIPVEIESYFPEINRQADIFVNGKTVIEFQRSSISISEMIQRTMDYLSIGLEVHWILGQVVKKEKGRICLSAFQQAFIQSDKKLGYHFWHYSAKREICTLYYHLTFEKGNRFFASEMKFSMKSPLREWNKKLARIISRHAYIKRDREIERQKICFYYAKYKKHGQFMQKLFNAGYYLHYLPKEIGVDVEEQFLVLTPAVEWQFDLWEKFFKGLEKGDTFSVESFLESFKSVVSQILTIWLSPNESLKLGKSYLSYLIGEGVLSTIPDNRYRVKRKM | |||||||||||||||||||
1 | 4g6vA | 0.07 | 0.02 | 0.32 | 0.80 | DisCoVER | -------------------------------------------------------LSGKPTRSLIRENQSAVTL---A-NKGYDVVQNPEVLGP-KNPDYTING-QVFDNYAPANVRNIATTISNKVSSGQ-ASNIVVNLAD----SSASPAAIEAQINSIP--GLGKVIVIDK-LGNITII--K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 6dwoA | 0.05 | 0.04 | 0.74 | 0.67 | DEthreader | DTR-----HGTANFSNGNCLPKGSWWFHPD-TFQGRTHQPSPWMGDFSHLLMTPVITSQLIILFVSSAQLNLAREI---------SLRSTEM---LQQGIAD--HNY---------FYHTLYRTF----------QTFYEHYDTFSGVLYTNNGFTTVYLFSLIAQEKYE----------EMLEGFLLPKWLIDVI-----------------IRPDLMPQFLEAMKKGATQQSRQGT-----YHE-SVNHT---LDYAYSDFCISQV--------E---SSFAVYQDFAGLIKYGSEYIGKPEMAQPLLLMYPGESMSAIFNSLGFYPVTPGTGEY-------YNTAERPFSLST- | |||||||||||||
3 | 5w1eA | 0.05 | 0.04 | 0.91 | 0.87 | CEthreader | LGRLTGADGGTLSLSALERTTGLARSTVDRLTATLARMGYVRLDGRDVVLAPRLMELGNAYLAALRLPALLSARADGLADELDESVSLAVGDRDGIRFIHQATRRRAMSLSFRLFAAEWTASDWHRWRERRAADPGDHSFPAVPPREPGAPGEDFARRAAKAAADGWALDDQLIEPGLVAVSVPVRDPGTGRVACVASVVSHTSRHTAPDLRAALLPRLRAAVAAMEDDLRAAP-------------------APEPGPPPAGLALWTGASKQELGREFVESLARGLTVLTAFGEGRSALTLTQVAQATGLA--------------RATARRALLTHARAGLVAPAAGHTFTLTPRV | |||||||||||||
4 | 3apoA | 0.06 | 0.06 | 0.90 | 0.67 | EigenThreader | LRIGAGDDRMFIFRSESLVAFAMQHVRCSKGEDCLVGWVDCDA-QDSLCKSLTPGATLNDREKSSVMEIIHNLNQLEDRLAHHRWLVFFHFGNDFQPSLAVFKGTKEYEIHHGKKILYDILAFAKESVN--SHVTTLGPQNFPASDKEPFAPWELRKASTLLYGQLKVGTLDCTIQAYPTTVVFNQ----SSIHEYE-----GHH--------SAEQILEFIEDLRNSTFNELVKQRKHDEVLMPEWKRMARTLTGLITQENVQRYFYPQKSSGWNRDAYSLRSWGLGFNEKVLTHWVVDFYA---------------PWSGPSQNFAPEFELLARMIKGKVRAVDCYPSVKLYQYE | |||||||||||||
5 | 4esjA | 0.12 | 0.07 | 0.61 | 0.35 | HHpred | ------NSQKARILTEDW----VYRQSYCPNCGNNPLN--------HF-PVADFYCNHC--SEE------------------------FELKSKK-----------------GNF---------------SST---INDGAYA----------TMMKRVQADNNPNFFFLTYTKN-FEVNVLPKQ-FVTPK-SIIQRK--PLAGWCNIDLSQPSRDGQVRDPEKVTKEFKQGLFLR--KSSLSSR-----------------------------------GWTIEILNCID-KI-EGSEFTLEDMYRFESD-LKNI-FVK--NNHIKEKIRQQLQILRDKEIIEFKGRGKYRKL--- | |||||||||||||
6 | 2p4wB | 0.13 | 0.05 | 0.39 | 0.28 | MRFsearch | --------------------------------------------------------------------------------------------------------------------QKAVLEHLRILEEAGLIESRVEK-------------------------RPRKYYMIK---KGLRLEILLTPT---LFGSEMYEAKGSPEYEQAKELIKLAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRL-----------------------------------------------AEENRQIIEEIFRDIEKI--LPPGYARSLKEKFL---------------------- | |||||||||||||
7 | 3dpuA | 0.08 | 0.06 | 0.79 | 0.52 | FFAS-3D | ---IVKQGEAVRQYFQSIEEARSKGEALVHLQEIKVHL-IGDGMA------------------------GKTSLLKQLIDELKECLFHFWDEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR------------------------------FHRISCVESIAKSLKSAVLHPDSIYGTPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITLNNLGIVLYFELSEIYVLD---PHWVTIGVYRIINSKTKNGHLNTSALGYILNE------EKFTYTLLEQRYL---LDIMKQFELCYDEGKGLFI----- | |||||||||||||
8 | 4amsA | 0.13 | 0.11 | 0.82 | 0.65 | SPARKS-K | --------------------------------------------SHHHHHHSLEVLFGSLIYTYKLEKYVRTKIFPKILLIPDRYIIKGSFRRVPFVTDIDVVNNV-----YPEISYDEIIKLVNNIQSDNIILAYLSCERFKISTGQSLLPDNEKNEFQLVQKKLFFLLRWKPENNSTILLQYYVKLGSYPVGIDVVINYQKIDLTPAYKNAALYQLQLANYS-REYYYMLFPLRYYFKNQDISQRLENIIEKKY---GLYKQLMVRIDDYHTLYKSATNIVIGILRDIIKKVATNNSIKIEEWDILLKVLYQEINTAVNNRKYFYRYIAMVPPQDRSKNYIS------------- | |||||||||||||
9 | 6asyA | 0.10 | 0.06 | 0.66 | 0.73 | CNFpred | ----------------SVQQDIKFLPFKVVEKKTKPYIQVDIGQTKTFAP-------------EEISAMVLTKMKETAEAYL-----------------GKKVTHAVVTVPA-YFNDAQRQATKDAGTIAGLNVMRIINEP----------TAAAIAYGLDKREGEKNILVFDLG--GGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV--------MEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKA---KRALSSQARIEIESFYE----------------------SETLTRAKFEELNMDLFR----------STMKPVQKVLEDSD------------------- | |||||||||||||
10 | 6ez8A | 0.07 | 0.05 | 0.71 | 0.83 | DEthreader | -P-YTLTALLLTPPPELLQTLTGISLCVLALSCVGAAVA------LHPESFFSVSLTAICGLICSILSR--------------------LSVTCLACTAVR-----NCVMLCSELGLQLIIDVLTLRNSVRTLLLIDFRLVSFL---EAKAENLHLLKLQERVLNNVV---------VPKLFYKC--------DPVVAVRDQVTD-MENNLSRV---------TPT-LTPFRL---------N-FGDAALYQSLPTL-----------------LIHEQIPLSLDLQAGLDCCCLALQL-----LIHCVHFILEAVVQPGEQLLSVLNGVPAFLTPL-----AMSKRENIATHHLY- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |