>PF06008 (259 residues) LQGLSVSTGALEQIRHVEMQAKDLRNQLLGFRSAISSHGSKMDGLEKELSHLNQEFETLQ EKAQVNSRKAQTLYNNIDQTIQNAKELDMKIKNIIQNVHILLKQIARPGGEGMDLPVGDW SRELAEAQRMLRELRGRDFKKHLQEAEAQKMEAQLLLNRIRTWLESHQVENNGLLKNIRD SLNDYEAKLQDLRSVLQEAAAQGKQATGLNHENEGVLGAIQRQMKEMDSLKNDLTEHLAT ADASLLQTNSLLQRMDTSQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LQGLSVSTGALEQIRHVEMQAKDLRNQLLGFRSAISSHGSKMDGLEKELSHLNQEFETLQEKAQVNSRKAQTLYNNIDQTIQNAKELDMKIKNIIQNVHILLKQIARPGGEGMDLPVGDWSRELAEAQRMLRELRGRDFKKHLQEAEAQKMEAQLLLNRIRTWLESHQVENNGLLKNIRDSLNDYEAKLQDLRSVLQEAAAQGKQATGLNHENEGVLGAIQRQMKEMDSLKNDLTEHLATADASLLQTNSLLQRMDTSQ | |||||||||||||||||||
1 | 2tmaA | 0.09 | 0.08 | 0.92 | 1.51 | FFAS-3D | MDAIK------KKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD------------RAQERLATALQKLEEAEKAESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER-- | |||||||||||||
2 | 5nnvA | 0.09 | 0.07 | 0.86 | 0.64 | DisCoVER | -----AKEEELAESSAISAKEAKIEDTR-----------DKIQALDESVDELQQVLLVTS-EE--LEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSK-QEAVFETLQAEVKQLRAQVKEK-----QQLSNELTELKIAAAKKEQACK-GEEDNLARLKKELTETE-LALKEAKEDLSFLTSES-SSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEK-RLY------- | |||||||||||||
3 | 3ayfA | 0.04 | 0.03 | 0.74 | 0.83 | DEthreader | -----------------------------IFTIL--SSTVLLVGGYWIFKEMA-PRPKTKETIASDQIQQIAFF--TFNIAKGYHLQLAIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGLGLEWFLLGRIWQIILVVGMLLWLFIVFRGVKRGLHLFYSAIAVPFFYIFA-FF--IQ--P--D---------------------NF--T--DF-WRWWIIHLWEGIFEVFAVVVIGFLVQK | |||||||||||||
4 | 5xg2A | 0.11 | 0.10 | 0.86 | 0.56 | CEthreader | -----------------------TKGAIVRWGKRKEKLIEEIRAREEERNALVVRLGEIDRTFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEIL-TGEARLPGLRERAENLRRLVEEKRAEISELELRIKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALNPEARELTEKIRAVEKEIAALREELSRVEGKLEGL----------- | |||||||||||||
5 | 7dbwC | 0.05 | 0.04 | 0.85 | 0.82 | EigenThreader | VTTHPKTSGYAKAIAEYYDLHLVMYAQIDDPEPWGDNAADNIRSQWQRVTTDD-----------------VAKWYPQRQFDWVHIETQIRHAVHAELIVGLALLLTNALGTNNNPIVQSQLADLVRFRETCKAFAIAAEETNNIYVDLGRAHYLENIHNAVNQLIEFGPKLEEALRDRVSIFRQISERYLWGARHEMFEKFNYLVRLLTMQRLTDLARQVLGEALAARAAEVEKNV----------------------- | |||||||||||||
6 | 4uxvA | 0.09 | 0.07 | 0.86 | 0.82 | HHpred | ----QVLVHIDDLLTAAESSIEKILREISDLVTSEEKSREEIEQVRERYSKSRKNLLAYSHLYGELYDSLEKDLDEIW--YITARKVLLEQDRNLERLQSYIDDVPKLLAD----CKQTVPGQIAKLKDGYGEMKEKGYKLEHIQLDKELENLSNQLKRAEHVM-TEL-----DIDEASAILQLIDENIQSVYQQLEGAGQSVLSK---MPELIIAQQAFEKRLDEIGKLLSSVKDKLDAE------------------ | |||||||||||||
7 | 2tmaA | 0.10 | 0.09 | 0.95 | 0.55 | MRFsearch | --------AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRA-----QERLATALQKLEEAEKAADESERGVIESRAQKDEEKMEIQEIQLKEAKHIVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL | |||||||||||||
8 | 6z9lA | 0.15 | 0.14 | 0.92 | 1.50 | FFAS-3D | -------ASNQEKLATAQQAESDAQQARSASQQALNTAKTTQATAEKELSVHKATLANLQAVATKSTTNYEEKVRQTATAEKSLQQTKDQLATINELIQNRAAVLE------------KAKTNVAEAQAIEQTSAKVEKQEAQKAEENTLNSLKEVLDLAKENLNQKQVALKTSTRSLSR-LENAQPTYEKALNELNKAEAAVVQAQEAYENSMKSLEELKEQQAVATLAYAQAQEDLSNAKLELQQYQGVLRDLEAQ- | |||||||||||||
9 | 7jh5A | 0.12 | 0.12 | 1.00 | 0.91 | SPARKS-K | -SGSELARKLLEASTKLQRLNIRLAEALLEAIARLQELNLELVYLAVELDEIKEVKDKSKEIIRRAEKEIDDAAKESEKILEEAREAISSGSELAKLLLKAIAETQDLNLRAAKAFLEAAAKLQELNIRAVELLIREALEHAKRRSKEIIDEAERAIRAAKRESERIIEEARRLIELARELLRAHAQLQRLNLELLRELLRALAQLQELNLDLLRLASEPDEARKAIARVKRESNAYYADAERLIREAAAASEKISREA | |||||||||||||
10 | 5j1iA | 0.09 | 0.08 | 0.92 | 0.99 | CNFpred | ----------ARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVL-AAPTLRSELELTLGKL----EQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAHEEQLKEAQ--AVPATLPELEATKASLKKLRAQAEA--QQPTFDALRDELRGAQEVGERLQQRHG-EVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQA-SQAVREQLRQEQALLEEIERHGEKVEECQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |