>PF05987 (339 residues) TPVEFTGKAGEYFGIWIVNLLLSIITLGIYSAWAKVRRKKYFYQNTLIDGVGFDYHASPI AILKGRIIAFVFFMAYIFSQHISPFLPTVFALIILFLMPWLVIRTMTFNARNSSYRGLRF DFNGDMREAAIVFIGLPILIIFTLGLIVPYMVMRQSRYLIQNHKFGLTAFSMDAQAKDFY QIYGKALLLLLGIGAALSVAVTLTVDQNFLLNAVNDMRTVETFANFGIIIAVFFLFYFLV ILGIGAYIQSRISNLVWNSTTLGNLSFHSHLRARDMLWLYLSNLLIIICSFGLLTPLAHI RMMRYRASRLNLTGETDFERFIGDKKADVKATGAEMAEM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TPVEFTGKAGEYFGIWIVNLLLSIITLGIYSAWAKVRRKKYFYQNTLIDGVGFDYHASPIAILKGRIIAFVFFMAYIFSQHISPFLPTVFALIILFLMPWLVIRTMTFNARNSSYRGLRFDFNGDMREAAIVFIGLPILIIFTLGLIVPYMVMRQSRYLIQNHKFGLTAFSMDAQAKDFYQIYGKALLLLLGIGAALSVAVTLTVDQNFLLNAVNDMRTVETFANFGIIIAVFFLFYFLVILGIGAYIQSRISNLVWNSTTLGNLSFHSHLRARDMLWLYLSNLLIIICSFGLLTPLAHIRMMRYRASRLNLTGETDFERFIGDKKADVKATGAEMAEM | |||||||||||||||||||
1 | 6ob6A | 0.10 | 0.09 | 0.86 | 1.03 | FFAS-3D | -------------RYKAVWLIFFMLGLGTLLPWFFMTATQYFTNR--LDMNSLSAIFNNVMTLCAMLPLLLFTYLNSFLHQRIPQSVRILGSLVAILLVFLITAILVK-------------VQLDALPFFVITMIKIVLINSFGAILQGSLFGLAGLF-----------------PASYTAAIMSGQGLAGFFASVAMICCAVIILTIICYLGLPRLEIKAILKKISVLAFSVCFIFTITIGMVSCFLTFNIFDWLGRSLTAVFMWPGKDLVLARLVFVPLLLFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS-- | |||||||||||||
2 | 7abhu | 0.07 | 0.07 | 0.92 | 1.29 | SPARKS-K | VRNTTARAFAVVASALGIPSLLPFLKAVCQARHTGIKIVQQIAILMGILP----HLRSLVEIIEHGLVRTISALAIAALAEAIESFDSVLKPLWKGIRLAAFLKAIGYLIPLM-----------DAEYANYYTREVMLILIREFQEMKKIVLKVVKQCCYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNDHKLEEQLIDGILYAFQNGFGTVVNALRVKPY-------LPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTC----QEEKGVVLYEYLGEEYPEVLGSILGA | |||||||||||||
3 | 3rkoC | 0.10 | 0.09 | 0.85 | 1.40 | CNFpred | ISIHLAIDGLSLLMVVLTGLLGVLAVLCSYQGFFHLNLMWILGGVIGV-----FLAIDMFLFFFFWEMMLVPMYFLIALWG-TRITAATKFFIYTQASGLVMLIAILALVFVHY--VWTFNYEGVEYLLMLGFFIAFAVKMPVLHGWLPDAHSQA---------------------PTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAP-----IAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTG-----------SQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKM-------KWLPALSLFF | |||||||||||||
4 | 6f2gA | 0.08 | 0.06 | 0.76 | 0.80 | DisCoVER | -------------------GITALTVVVGTVIGAGIFFKPTAVYGAAGAPGLGAWFVAGIITIAGG-LT------VAEIGTYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIF-------------------------ATQFVNLSDSTIVTAISIMNFSIQATI-LKLIPLVVIIVAGLLYLLIATLFAYDGWINVGTLAGEPGKMLPKVIIGLSIVMAVYLNIAYLFVLVASHLVTIGIL-ISVFGNGIIGLRVPYALA---------------------------QKMLPFSDWFALPINGG-LVMLIAIIFNQLTIIPLIAGI- | |||||||||||||
5 | 4aw6A | 0.05 | 0.04 | 0.75 | 0.83 | DEthreader | TFSYQDKTSFWSGLYSETEGIGILLATLFSALAGLPWSLYNTFVIEEK-HGFNQQTFFMKDAIKKFVVTQCILLPVSSLLLYIIKFAW-FTLVSLLVIYAIAPLFDKVEGSKRSS--H-S-N-A---YF-YG--FF--------------N--KR-IVLFDTLLEQGCKNVLALGHELGHWKLGH-VK-NIIISQMNSFLCFFLFAVLI-----FDSQPTIGLLIIFFIFSPYNEVLSFCLTVLSRRFEFQADAAKADLYSA--IKLNKLGFPVSDWLFSMWH-----------------YSH-PPLLER----------------------------- | |||||||||||||
6 | 4rp8A | 0.05 | 0.05 | 1.00 | 0.74 | CEthreader | MSEVYGINGAISDTYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGLIAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASWIAYKVAPFLKEESVEDLKLPGWLNIFHDNIVSTAIVIDTVQAMAGKVHWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFGGWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFS | |||||||||||||
7 | 6i0dN | 0.10 | 0.09 | 0.89 | 0.70 | EigenThreader | ------MTLAILAVFSVALTLLGFVLVKRATLLGLALALASLLLTW---GKLALLGALWTVGLVFYLLVLYAALGMHLLASTRHLLLMLVALEALSLPLYALAQGLEAALKY------FLLGALAAAFFLYGAALFYGAT-----GLYALALGLLLVGLGFKAA----LAPFHFWTPDVYQGSVVLFMATSVKAAAFAALLSVVVGNLAALAQKEAKRLLAYSSIAHAGYMALGFYLLTYVLATGLAFAVLSQISEALR--------GLYLLGLAFLVAMLSLLGLAFAEAARAGYYYLGLGLAVFARPE-----EPPWARAAVVAAGVLLLALGLLPG | |||||||||||||
8 | 5x5yF | 0.11 | 0.07 | 0.67 | 0.25 | HHpred | ------------------------------------IVFRYL----------------SREVLVTMSAVSAVLLVIIMSGRFIQAMAFRIPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATQKRLLGYTMAPALVAILVAWFLAPQGINQFALLLNKQETLVPGRFQAMRDGTELAGIFISQKDLSNQER-GISILVAETQNIYLILHNGGNPDAVSDNPRYLQWRLSTPLLVFVVTLLAVPLSR--------VNPR-QG-R---FLKLLPAILLYMGYLALLIAGQLD---------------------------------------------- | |||||||||||||
9 | 6wc9A | 0.12 | 0.10 | 0.80 | 0.73 | MRFsearch | ---QFDRSVQRLLATRIAVYLMTFLIVTVAWA-----AHTRLFQVVGK----TDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFH--------EPLSKERVEAFSDGVYAIVATLLILDILVAALSATGPR------------------FLAYFGSFATVGLLLLNTLSLAFVGGLPLAYQQTSAFARQPRDELERVRVSCTIIFLASIFQLAMWTTALLEHVLMFAKLALYPCAS-LLAFAST-CLLSRFSVGIFHLMQIAVPCAFLLLRLLVGLALATLRVL----------------------------- | |||||||||||||
10 | 5tjvA1 | 0.11 | 0.08 | 0.74 | 0.99 | FFAS-3D | -------NPSQQLAIAVLSLTLGTFTVEVLCVILHSRSLR----------------CRPSYHFIGSLAVADLLGSVIFVYSFIDFLGGVTASFTASVGSLFLAAIDRYISI---HRPLAYKRIVTRPKAVVA-----FCLMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHID----------ETYLMFWIGVTSVLLLFIVYAYMYILWKAGKRAMSFSDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDV--------------FGKMNKLIKTVFAFCSMLCLLNSTVNPIIALRSKDLR--------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |