>PF05884 (296 residues) MPQDASDGYERLTDIAEAAKNEGSELKHVIRDVYRNYSELGSDIHDYYEKNLKKFPETVE QTANDLYSFSQTFREDANKFLESMMEMSPPEKISGFNISKLFANSIFLLVIASFSRFVGS YITAPVFGIIFLNVGAIILSVVVVPIIATYVYQNLKVRSLAEKRIACAGFIFLQSVLIGF INQNDWLESVPFSVLTQIISSFSYPLILAHTDNRQKILGIVAGSSMIFHLAHGFFFSGMD GAFLTIAILYTILAICLIQYSIAFRCQTDFDMMLLTMQYVFLVSVVRMFAVMSFGK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MPQDASDGYERLTDIAEAAKNEGSELKHVIRDVYRNYSELGSDIHDYYEKNLKKFPETVEQTANDLYSFSQTFREDANKFLESMMEMSPPEKISGFNISKLFANSIFLLVIASFSRFVGSYITAPVFGIIFLNVGAIILSVVVVPIIATYVYQNLKVRSLAEKRIACAGFIFLQSVLIGFINQNDWLESVPFSVLTQIISSFSYPLILAHTDNRQKILGIVAGSSMIFHLAHGFFFSGMDGAFLTIAILYTILAICLIQYSIAFRCQTDFDMMLLTMQYVFLVSVVRMFAVMSFGK | |||||||||||||||||||
1 | 4yayA | 0.10 | 0.09 | 0.93 | 1.09 | FFAS-3D | ---DLEDNWETLNDVIEKADN-AAQVKDALTKMRAAALDAQKDFRHGFDILVGQIDDALKLANKEAQAAAEQLKTTRNAYIQKILNSSDCPKAGRHNYIFVMI-PTLYSIIFVVGIFGNSLVVIVIYFFLLNLALADLCFLLTLPLWAVYTAMEYR-WPFGNYLCKIASASVSFNLYASVF------------LLTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLAGLASLPIGLGLTKNILGFLFPFLIILTSYTLIWKALKKNDDIFKIIMAIVLFF--FFSWIPH-- | |||||||||||||
2 | 3rkoB | 0.07 | 0.06 | 0.93 | 1.12 | CNFpred | ----------FIASMVVLVLDNLLLMYLGWEGVGLCSYLLIGAAAMKAFVVTRVGDVFLAFALFILYNELTLNFREMVELAPAHFADGN---NMLMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT---PEVLHLVGIVGAVTLLLAGFAALVQIKRVLAYSTMSQIGYMFLALGVQAWDA---AIFHLMTHAFFKALLFLASGSVILA-IPLVYLCFLVGGAALGFFSKDEILAGAMHINLMVAGLVGAFMTSLYTFRMIFIVFHGK | |||||||||||||
3 | 6z16A | 0.05 | 0.04 | 0.75 | 0.83 | DEthreader | APFLLALLVPF------------------------K--R--HVGWFVFPLPIALFVYFLSYIDVRNDEVI------------------------------VDGLSLLFALLITGIGSLVVSYLIYWFRDRSRYGQKSMLITMFGGLLMLGGFVAAIGGTYNIREL---G---K------A--APTPVSAYLHSTMVKAGIYVIALTFAVSSVWVWTVALVGLVTLCWASFL--KQTDLKAILAYSTVSQLGLITSLLGIGGLSFHYDENVFM-VAVLAAIFHLFNHATFKGSLMVT | |||||||||||||
4 | 5h5mA | 0.07 | 0.07 | 0.99 | 0.51 | CEthreader | IADAESTRENRKQKIVAECNNLRQALQELLTEYEKS-TGRRDDIPLGIAEVHKRTKDLRRHLRRAIVDHISDAFLDTRTPLILLIEAAKEGHE-ENTRYRSKMFQEHANEIVSVARLSCQLSSDVESVSVIQHTAAQLEKLAPQVAQAAILLCHQPTSKTAQENMETYKNAWFDKVRLLTTALDNITTLDDFLAVSEAHIVEDCERGIKGITACETVDCAAGSIRGRALRVCDVVDAILKTQRVDQFAERASALANRQEAHGLTWDPKEEEMNEFINACTLVHDAVKDIRHALLMN | |||||||||||||
5 | 6o7ua | 0.09 | 0.09 | 0.93 | 0.62 | EigenThreader | LLEQRQVIFECSKFIEVNLWRLLLKKVKRVIDVDTLNRQIDDLQRILDTTEQTLHTELLVIHDQLPVWSAMTKREKYVYTTLNKFQQHRTNKFTQAFQSIVDAYGATVVTFPFMFAIMF-----------GDMGHGFILFLMALFLVLNERKFGAMHRDEIFDMAFTGLLLMGAFSVYTGLLYNDIFSKSMT--ILLFSNSYKMKLSI------LMGYAHMTYSFMFSYINYRAK---NSKVDIIGNFIPGLVFMQLINMFLAPGTIDDQLYVVLLLAALVCVPWLLLYKPLTLRR | |||||||||||||
6 | 6iu3A | 0.13 | 0.07 | 0.54 | 0.43 | HHpred | -------------VAAGAIKSEADNYARELKREQEEIIREAAEVAEILARYG-IEPHEYGPVVNAL----RKKPQAWLDFMKFELGLEKPDP--------KRALQSA--FTIAIAYVLGGLV--PLIPYMFIPVASVILTLMALLIFGYAKGYFTDNKFKSALQTALIGAASAAAFGMAKAVQSENLYFQ---------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5z96A | 0.10 | 0.10 | 0.99 | 0.45 | MRFsearch | ---HEVDSLRHSRSRLNIYKALAFLTAFQLSWELQELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLILGLFIRKPFIKFICHTASYLTFLFLLLLASQHIDNRQGPPPTIVEWMILPWVLGFIWGEIKQMWDGHDWWNLMDFVMNSLYLATISLKIVAFVKWHPTLVAEALFAIANIFQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYEETEFTEFVGATMFGTYNVISLVVLLNMLIAM | |||||||||||||
8 | 6me6A | 0.08 | 0.08 | 0.94 | 1.05 | FFAS-3D | --ADLEDNWETLNDVIEKADN-AAQVKDALTKMRAAALDAQKDFRHGFDILVGQIDDALKLAVKEAQAAAEQLKTTRNAYIQKYLGDGARPSWVAPALSAVL---IVTTAVDVVGNLLVILSVLRLVSLAL---ANLVVAFYPYPLILVAIFYDGWAFGEEHCKASAFVMGLSVIGSVWNITA--------IAIDRYLYICHSMAYHRIYRRWHTPLHICLIWLTVVALYTAAVVVIHFLLPIAVVSFCYLRIWVLVLQKDQFEEVECLKPSDLRSFLTMFVVFVIFAICFAPL-- | |||||||||||||
9 | 6r9tA | 0.06 | 0.06 | 1.00 | 0.77 | SPARKS-K | SSIPAQIS-PEGRAAMEPIVISAKTMLESAGGLIQTARALAVPSWSVLAGHSRTVSDSIKKLITSMRDKAQLECETAIAALNSCLQLAPREGISQEALHTQMLTAVQEISHLIEPLANAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNAGVVGGMVDSITQAINQLDEGPMGEPEGQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASEAAAVAAENEEIGSHIKHRVQELGHGCAALVTKAGALQ | |||||||||||||
10 | 4he8F | 0.08 | 0.07 | 0.91 | 1.06 | CNFpred | ----------MLTLVLADSYPVMFIGWEGVGLASFLLIGFYADSARKAFIVNRIGDLGFMLGMAILWALYTLSISELKEAMEGPL--------KNPDLLALAGLLLFLGAVGKSAWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVL---PDVSYAIAVVGLLTAAYGALSAFGQTDKIVAYSTISQLGYMFLAAGVGAYW----VALFHVFTHAFFKALLFLASGSVIH-TRWHALIGALALFWSKDAILAATLTYPFGGVGFYVGALLVAVLTAMYAMRWFVLVFLG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |