>PF05840 (324 residues) HQIQTLATMTAAMFSGTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDA LTTDKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLS QDALSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPIHRKAEMMATMKGLEL LAEARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRD GLRWYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKV EYVDGSKGTPTSYIATYIGKNLDS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | HQIQTLATMTAAMFSGTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTDKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDALSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPIHRKAEMMATMKGLELLAEARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRWYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKVEYVDGSKGTPTSYIATYIGKNLDS | |||||||||||||||||||
1 | 5wa3A | 0.08 | 0.03 | 0.34 | 0.94 | DisCoVER | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERWWRFRVDYHAG---------------------MD-DLILDGVRPAFAAFA--AQAPMAYFLRH--WRRGPHLRIYVSTTREALEVVRPAIEVVGGYLPSPGMWS-PDNTIHAEGERPEVLLADFYADTTPSVTRL- | |||||||||||||
2 | 6s8bK | 0.05 | 0.04 | 0.73 | 0.83 | DEthreader | --------FLDYKII-------------------YIINQLFGKNYSKVDADA------P--KKLDNLILEYK--LNVINKTNLILKYQFIEEYGPDVILFITLIL--------------DNCFISKVKERYNEGWRKLIEGLRCYSRKRLRIDLYSVKIV------------EI--PSTSDIAFPSYYALVRADSDYLDLLEGKSGYGRIIVTWHVSISSALNRGLLVELELVN--K----HKGFVIYAG-------GDDLLAMLPV-DEVLDFIKESRRAFAGFNGSLPIV---GRSYSVIIAHDPFFVINDSYNL------- | |||||||||||||
3 | 6zydE | 0.06 | 0.05 | 0.79 | 0.70 | CEthreader | DFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDR-PFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLY------------VPNSLFSSISVEN------------------PGRMTNRRITTTIGLR------------------YEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFA-DSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD------------------ | |||||||||||||
4 | 6ifkA | 0.07 | 0.06 | 0.94 | 0.80 | EigenThreader | KIDLFYGA-------LKVIQRATGERKKHALVGADWFDEIAAIATRIKNELAEFEFFEATLSFVPSSTNADISLADHSRLTAAFALAIYDYLEDKDFMSEYIADSLLDKLGLNRANFVLTEKTVETLVQFEKDFNQFLLANF---QTRLYVAFMISKKKISRYDYQTLMLICRGLYQFSKEYAALSKRLAVVRLDVGAAFMAGFSQQGNGQYSTLSRSATFSRSMSLFFKVYINQFAS--DKKLSIYAGG--------DDVFAIGSWQ-DIIAFTVELRENFIKWTNGKLTLSNEKDSISLFSSNVYDDKLEQIRYFFNHQDER | |||||||||||||
5 | 2pffB | 0.15 | 0.13 | 0.86 | 0.55 | HHpred | NDIHALAAKIKNYITARIMAKRPDGNAQNTDDYFEELRDLYQTYHVLGDLIKFSAETLSELIRTTDIPSNTPDKDYLL-SIPISCP-----LIGVIQLAHYVVTAKLLGFTP-------------------GELRSYLKGAT-----GHSQGLVTAVAIAEDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENGVPSPMLSNLTQEQVQDYVNKT-NS----HLP-AG-KQVEISLV------NGAKNLVVSGPPQSLYGLNLTLRKAKALDQSRIPFSEFSNRFLSPFHSHLLVPASDLINKDLVKNNV- | |||||||||||||
6 | 5svdA | 0.07 | 0.05 | 0.77 | 0.38 | MRFsearch | -TMENMFLFMLNELKPHLKTMMNHQTLPVYQTPESFKSELRDIITTLYKGFTNDRSFWRLVFNTADEKDPKEESFLEYNVIGSARLKYVERLYRLYMKDRIVKLAKR-----DTTGAFVKEKDVKQILDAVVPELSML----LNSNMDFGTAIINTSNKQGGYLRDDVIAQLIQKYFLEQLIDY---------------------------------DDKFLNITIDSMLALPEERLIQMCYHGVFSHVVEH-------VLQTTRVDIIKRKMLLNILSKESVNLAC--------------------NVYGSHIMDKLWEF--- | |||||||||||||
7 | 5j4oA | 0.08 | 0.05 | 0.66 | 0.71 | FFAS-3D | SRQQRFNTSIRD-FEFWLSEAETLLAMKDQARDLASAGNLLKKHQLLEREMLAREDALKDLNTLAESSGTFNVDQIVKKKDNV--NKRF-LNVQELAAAHHEKLKEA--------------YALFQFFQDLDDEESWIEEKLIRVSSQDYGRDLQGVQNLLKKHKRLEGELEPAIQNVLDMAEKL----------------------KDKAAVGQEEIQLRLAQFVEH-WEKLKELAKAR---------------------------GLKLEESLEYLQFM------------------------------------------- | |||||||||||||
8 | 5cwcA | 0.13 | 0.07 | 0.58 | 0.64 | SPARKS-K | ----SEKEELRERLVKICVENAKRKGDD-TEEAREAAREAFELVREAAERAGID-----------------SSEVLELAIRLIKEVENAQREACRAAAEAFKRVAEAAKRAGIT-----SSEVLELAIRLIKECVENAQREG-------------------YDISEACRAAAEAFKRVAEAAKRAG-----------------------------ITSSETLKRAIEEIRKRVEEAQRENDI-------------------------SEACRQAAEEFRKKAEELKRR------------------------------------ | |||||||||||||
9 | 6axuA | 0.08 | 0.06 | 0.76 | 0.67 | CNFpred | LQAIADYSAWFFVWDDRHDRDIVH-------GRAGAWRRLRGLLHTALDSPGDHLHHEDTLVA-----------GFADSVRRLYLPATWNARFARHFHTVIEAYDREFHNRTR-GIVPGVEEYLELRRWIYTDLLEPSSGCELPDAVRKHPAYRRAALLS-----QEFAAWYNDLCSLPKEIAG-DEVHNLGISLI---------------THHSLTLEEAIGEVRR-RVEECITEFLAV-------------ERDALRFADELADGTVRGKELSGAVRANVG-------------------------NMRNWFSSVYWFHHES | |||||||||||||
10 | 3s5hA | 0.07 | 0.05 | 0.74 | 0.83 | DEthreader | ---------------------PEWIHKSIEKRYNMTYLGTNDPLDVE-TM--LKTSKSIDFVFEMT-KLDPLLIFEFE---PTTGIVY-LQ------N--LYS-KDDHNVTDKY-NA-Q---AL--FNLEM-LIALEAVKES-------DFSNKKKVIDILKRKINGMKTTFSEGFVLPTFV------NSVSMSGILF----KP----GEYLDPSF----T-VIV-AALKNSLWDTVRGL-NGAYGVFADIEY-DGSVVFLSARDPNLEKTLATFRESAKGLRMDFYKFADLESKVEFEIVITKANIGEFKKVLI---E----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |