>PF05794 (455 residues) LRHDILFDPQLQFRPNLDGERGKRKKTIIDKYWNEIQKECSQFFVPSDSKSASPRSISRL PLLFATLRDILLSLLPYKDRQSVNDVMDIDLLIQQLSHGSFDFVSMARWLGEVFKSHCAP MRDVWVAEMINRFVTSSETGSVDKLVQGLRMIFQILEAMKLDVANHQIRILRPILIETAV DFEKDYFSQLIQHAKIDINDSLRWFYKSYLKNKANLGPYFDSAVSKTDDKNLKLVAVAGL INLLSCRNMATDFPSTLAFDHTRLILLRADIRQLVCVQLCVILYKQLVFNNYQNVSERNQ YLQPNVIQKIQEEVLAIVTDDNGNVKWTRNVNAIAIQLTKNVVTPINPTSTQNTGPLPQS MIEFGCGWLMKQIQPGSDVYGLMEEKIFKEVLTDVNSTLKKFDMDSKVSLNDSKNDNFTN KAKNAGTEMSNIAHRIATLVRFHWSVFGSHYREYL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LRHDILFDPQLQFRPNLDGERGKRKKTIIDKYWNEIQKECSQFFVPSDSKSASPRSISRLPLLFATLRDILLSLLPYKDRQSVNDVMDIDLLIQQLSHGSFDFVSMARWLGEVFKSHCAPMRDVWVAEMINRFVTSSETGSVDKLVQGLRMIFQILEAMKLDVANHQIRILRPILIETAVDFEKDYFSQLIQHAKIDINDSLRWFYKSYLKNKANLGPYFDSAVSKTDDKNLKLVAVAGLINLLSCRNMATDFPSTLAFDHTRLILLRADIRQLVCVQLCVILYKQLVFNNYQNVSERNQYLQPNVIQKIQEEVLAIVTDDNGNVKWTRNVNAIAIQLTKNVVTPINPTSTQNTGPLPQSMIEFGCGWLMKQIQPGSDVYGLMEEKIFKEVLTDVNSTLKKFDMDSKVSLNDSKNDNFTNKAKNAGTEMSNIAHRIATLVRFHWSVFGSHYREYL | |||||||||||||||||||
1 | 4iggA | 0.08 | 0.08 | 0.92 | 1.13 | FFAS-3D | -------------------ESQFLKEELVAAVERKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVLKVVEDGILKNAGNEQDLGIQYKALKPEV--DKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILTASQACLRDLIYKQLQQAVTGGELAYALNNFDKQIIVDPLSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLQLEALCPQVINAALALAAKPQ-------SKLAQENMDLFKEQWEKQVRVLTDAVDDDFLAVSENHILEDVNK--------CVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSYTEKVLEATKLL- | |||||||||||||
2 | 5vchA | 0.09 | 0.08 | 0.85 | 1.17 | CNFpred | -----------------------ETRSLSAQALSYVSSLIEEE------GEINPQYAAKFASLIPSVVQVLDATIREGDTTNTKLIFNNDFLLLDSQLTGNTIADLVKLALQIAVNSDEDIRVFAVQFVTSALVYRKSKINQKLGPEITLAALKVASE-PALTALRLISNASGELSSQVGVPIIEHLPTMLSSSPFERRSILLAISVLVTGSPDYTLSQFDKIIPAT-EAVVQLAALKCIVQLSTNL--QDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFI-------AHNDIIKYLDPLMNKLFQMLETQ-QSPKLRAAIVSAIGSCAFAAGSG------------FVPYFKTSVQYLQQFIQ-LSEDDIELKALTFENISTMGRAV---------------KSAAFAEYAEPLVNAAYEAIKTSARLRESGYAFIANMAKVYG | |||||||||||||
3 | 3fs1A | 0.05 | 0.02 | 0.36 | 0.57 | DisCoVER | VSG-------------------------------------------------------------------------------------------------------------------------------------------------------------IRAK----------------------K--IA--SIDVCESMKEQLLVLVEWAK-YIPAFCELPLDDQVALLRAHAGEHLLLGATKRFKDVLLLGNDYIVVSIRILDE--LVLPFQE-L------------------------------------------------------------------------------------------------------QIDDNEYA-YLKAIIF-FDPDAKGLSKIKLRVQLEDYINYDSRGRFGELLLLLPTLQSITWQMIIDLLQEML-L- | |||||||||||||
4 | 4zhjA | 0.06 | 0.04 | 0.67 | 0.67 | DEthreader | ---------------------------------RAIESLKKLNRPY---LPIPELDGAIEP----------------------------EAIAQRAMKWANLRKKPKLDKKVAI--GSIYEVMKGLQGNGY--------------------D--V---LP-GSAKELMEAVI-DAQAQ--PELLNVQPGFAAYYLNVLHFGTHGSLEFM-----------------G----------YAANNPSEATIAKRRGYASTISYLTHVIGQPPSEAIATLVNIASLALPTLIAESIGRNEIDLLQDITLATRAAVAALVQEQINADG-RVSFVSKLNFKAPWVKSLCDS-G------YPNV---NEEKLKPLFEYLFCQGPGDPIRNPKTYENLDSSEISLTDVS-YFDSDPAYIAD---TANAQ---DRTK-NKWYGMGRELSKR-NNS--------- | |||||||||||||
5 | 6rlbA | 0.06 | 0.06 | 0.98 | 0.67 | CEthreader | GLCIEASSRIMELDSNDGLLKVHYSDRLVILLREVRQLSALGFVIPAKIQQVANKQAIILKQVAHFYNSIDQQMIQSQRPMMLQSALAFEQIIKNSKAGSGNPKELEGYIQKLQNAAERATENRKLRKWHTTFCEKVVVLMNIDLLRQQQRWKDGLQELRTGLATVEAQGFQASDMHAWKQHWNHQLYKALEH---QYQMGLEALNENLPEINIDLTYKQGRLQFRPPFEEIRAKYYREMKRFIGIPNQFKGVGEAGDESIFSIMIDRNASGFLTIFSKAEDLFRRLSAVLHQHKEWIVIGQV-----DMEALVEKHLFTVHDWEKNFKALKIKGKEVERLPSAVKVDCLNINCNPVKTVIDDLIQKLFDLLVLSLKKSIQAHLHEIDTFVTEAMEVLTIMPQSVEEIGDANLQYSKLQERKPEILPLFQEAEDKNRLLRTVAGGGLETISNLKA | |||||||||||||
6 | 3a0bC | 0.05 | 0.04 | 0.64 | 0.75 | EigenThreader | --------------------------------------------DQESSGFAWWAGNARLINL------------------------SGKLLGAHVAHAGLIVFWAGAMTLFE---------------LIPHIATLGWGVGPGGFFVVGVVHLISSAVLGFGGVYHA------------------INKMTTILGFHLIVLGIGALLLVAKAMLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLIC-------IAGGIWHILGALSMMGFIATCFVWFNEASQAQAMTFLIRDQKLGANVGSAGETMRFWDF---------RGPWLEP---------------LRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGFVSPRSWLATSHFVLAFFFLVGHLWHAGRAGFEKGIDRESEPVLSMPSLD------------------------------ | |||||||||||||
7 | 1vt4I | 0.11 | 0.08 | 0.69 | 0.53 | HHpred | -----------------------------------------------------QYQYKDILSVFEDA---------------FVDNFDCKDVQDM-PKSILSKE--------------------EIDHIIM------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQR-QPS---------MMTRMYIEQRD-RLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGS-GKTWVALDVCLSYKV--Q-CKM-----DFKIF----WLNNCNSPETVLEMLKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKLDHHSMTLTPDEVKS---LLLKYLDPQREVLTTNPRRLSIIAESIRDGLATWDNWVNKLTTIES----SLNVLE--PAEYRKMFDRLSVTILLSLIWFDVI----- | |||||||||||||
8 | 3odnA | 0.09 | 0.06 | 0.66 | 0.63 | MRFsearch | -----------------------CTYNMETRMAMQSRQQLEG----------------HTKDQISRMSGILGSK----------------------------ATKFKDIFTALLKE------------------------SRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVD---------------LLEVMDKFFNTLYQKMFTVLNT----------QYTFDENYMRCVSEHMKELKPFGDVPDKLSVQKRSFVATRTYGQALTTANYCVNVIKGCLHYQH---------EFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIMNFQ-------------DSGQDITNRVFQGCGREPILDRIVRDKFWSNLPHSVCSNEDIASSSIDRYMHSITTESNPEFMASQLSHLKNAIVHLRNA---------------- | |||||||||||||
9 | 2x1gF | 0.09 | 0.08 | 0.89 | 1.12 | FFAS-3D | --------------PGIYPVEESCSTMALA-FWYMLQDEVFEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYVLNDYILEILAAML--DEAIADLQRHPTHWTKL-EACIYSFQSV---AEHRQIPRLMRVLAEIPYEKLNVKLLGTALETMPAINLLVRGLATLGLKELCRDCQLQLKPYADNACHASLNTGRMK-NSDSVRLMFSIGKLMSLLR-------PEEIPKYLDIIVSPCFEELQAICQATPAARIRTIFRLNMISTLFSSFKRIAVLEAACSAMKHAITNLRSQPVMFFKPLMQQLLREFIQHSFKLFESTPEQSDTMETFFGCLTQIIKKIPQVLEDKTTLPESGAIRNSIQFLTHFVMQS-RNHAHVTEVVLATGEQTLYTAMMCVGYLTP----------------------RSQVDKFADILLAMNRKYAAEMAVWMKSLM | |||||||||||||
10 | 3ea5B | 0.10 | 0.09 | 0.92 | 0.88 | SPARKS-K | EGRILAALTLKNELVSKDSVKTQQFAQRWITQKNQIKTNALTALVSI-----EPRIANAAAQLIAAIADIELPHGAPELMKIMVDNTGLLALGYMCESADPQSNNILIAIVQGAQKAVRLAALNALADSLIFIKNNEREGERNYLMQVVCEATAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK-----SPNDASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNSIKDVVPNLLNLLTRQNEDPEDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND--QSLQVKETTAWCIGRIADSVAESIDPQQ----------HLPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATP------------SPIYNFYPALVDGLIGAASALTTMVEYVAETSASISTFVM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |